Gene : Bradi1g05170 B. distachyon v3.1
Defline:  (1 of 1) PTHR21737:SF4 - CACTIN Genomic Order:  648
Name:  ? Bradi1g05170 Secondary Identifier:  ? PAC:32806267
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g05170 0.5kb upstream 0.5kb upstream 8750 true Bd1: 3455952-3464701 Brachypodium distachyon
Bradi1g05170 0.5kb upstream 0.5kb upstream 500 false Bd1: 3464202-3464701 Brachypodium distachyon
Bradi1g05170 0.5kb downstream 0.5kb downstream 8750 true Bd1: 3455452-3464201 Brachypodium distachyon
Bradi1g05170 0.5kb downstream 0.5kb downstream 500 false Bd1: 3455452-3455951 Brachypodium distachyon
Bradi1g05170 1.0kb upstream 1.0kb upstream 9250 true Bd1: 3455952-3465201 Brachypodium distachyon
Bradi1g05170 1.0kb upstream 1.0kb upstream 1000 false Bd1: 3464202-3465201 Brachypodium distachyon
Bradi1g05170 1.0kb downstream 1.0kb downstream 9250 true Bd1: 3454952-3464201 Brachypodium distachyon
Bradi1g05170 1.0kb downstream 1.0kb downstream 1000 false Bd1: 3454952-3455951 Brachypodium distachyon
Bradi1g05170 2.0kb upstream 2.0kb upstream 10250 true Bd1: 3455952-3466201 Brachypodium distachyon
Bradi1g05170 2.0kb upstream 2.0kb upstream 2000 false Bd1: 3464202-3466201 Brachypodium distachyon
Bradi1g05170 2.0kb downstream 2.0kb downstream 10250 true Bd1: 3453952-3464201 Brachypodium distachyon
Bradi1g05170 2.0kb downstream 2.0kb downstream 2000 false Bd1: 3453952-3455951 Brachypodium distachyon
Bradi1g05170 5.0kb upstream 5.0kb upstream 13250 true Bd1: 3455952-3469201 Brachypodium distachyon
Bradi1g05170 5.0kb upstream 5.0kb upstream 5000 false Bd1: 3464202-3469201 Brachypodium distachyon
Bradi1g05170 5.0kb downstream 5.0kb downstream 13250 true Bd1: 3450952-3464201 Brachypodium distachyon
Bradi1g05170 5.0kb downstream 5.0kb downstream 5000 false Bd1: 3450952-3455951 Brachypodium distachyon
Bradi1g05170 10.0kb upstream 10.0kb upstream 18250 true Bd1: 3455952-3474201 Brachypodium distachyon
Bradi1g05170 10.0kb upstream 10.0kb upstream 10000 false Bd1: 3464202-3474201 Brachypodium distachyon
Bradi1g05170 10.0kb downstream 10.0kb downstream 18250 true Bd1: 3445952-3464201 Brachypodium distachyon
Bradi1g05170 10.0kb downstream 10.0kb downstream 10000 false Bd1: 3445952-3455951 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582087 5269 Grass View MSA
122043327 5273 Angiosperm View MSA
121346365 5274 Embryophyte View MSA
123428349 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.678        
cufflinks 5.857        
cufflinks 5.548        
cufflinks 5.184        
cufflinks 3.911       Low
cufflinks 5.92        
cufflinks 5.123        
cufflinks 4.843        
cufflinks 5.46        
cufflinks 4.071       Low
cufflinks 5.15        
cufflinks 6.002        
cufflinks 3.941       Low
cufflinks 4.128       Low
cufflinks 4.238        
cufflinks 5.634        
cufflinks 4.939        
cufflinks 7.425       High
cufflinks 5.593        
cufflinks 7.36       High
cufflinks 4.853        
cufflinks 5.403        
cufflinks 4.957        
cufflinks 5.202        
cufflinks 5.868        
cufflinks 5.711        
cufflinks 4.835        
cufflinks 5.18        
cufflinks 4.972        
cufflinks 6.628        

0 Strain