Gene : Bradi1g05741 B. distachyon v3.1
Defline:  (1 of 14) PF00421 - Photosystem II protein (PSII) Genomic Order:  723
Name:  ? Bradi1g05741 Secondary Identifier:  ? PAC:32798440
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g05741 0.5kb upstream 0.5kb upstream 2027 true Bd1: 3899762-3901788 Brachypodium distachyon
Bradi1g05741 0.5kb upstream 0.5kb upstream 500 false Bd1: 3901289-3901788 Brachypodium distachyon
Bradi1g05741 0.5kb downstream 0.5kb downstream 2027 true Bd1: 3899262-3901288 Brachypodium distachyon
Bradi1g05741 0.5kb downstream 0.5kb downstream 500 false Bd1: 3899262-3899761 Brachypodium distachyon
Bradi1g05741 1.0kb upstream 1.0kb upstream 2527 true Bd1: 3899762-3902288 Brachypodium distachyon
Bradi1g05741 1.0kb upstream 1.0kb upstream 1000 false Bd1: 3901289-3902288 Brachypodium distachyon
Bradi1g05741 1.0kb downstream 1.0kb downstream 2527 true Bd1: 3898762-3901288 Brachypodium distachyon
Bradi1g05741 1.0kb downstream 1.0kb downstream 1000 false Bd1: 3898762-3899761 Brachypodium distachyon
Bradi1g05741 2.0kb upstream 2.0kb upstream 3527 true Bd1: 3899762-3903288 Brachypodium distachyon
Bradi1g05741 2.0kb upstream 2.0kb upstream 2000 false Bd1: 3901289-3903288 Brachypodium distachyon
Bradi1g05741 2.0kb downstream 2.0kb downstream 3527 true Bd1: 3897762-3901288 Brachypodium distachyon
Bradi1g05741 2.0kb downstream 2.0kb downstream 2000 false Bd1: 3897762-3899761 Brachypodium distachyon
Bradi1g05741 5.0kb upstream 5.0kb upstream 6527 true Bd1: 3899762-3906288 Brachypodium distachyon
Bradi1g05741 5.0kb upstream 5.0kb upstream 5000 false Bd1: 3901289-3906288 Brachypodium distachyon
Bradi1g05741 5.0kb downstream 5.0kb downstream 6527 true Bd1: 3894762-3901288 Brachypodium distachyon
Bradi1g05741 5.0kb downstream 5.0kb downstream 5000 false Bd1: 3894762-3899761 Brachypodium distachyon
Bradi1g05741 10.0kb upstream 10.0kb upstream 11527 true Bd1: 3899762-3911288 Brachypodium distachyon
Bradi1g05741 10.0kb upstream 10.0kb upstream 10000 false Bd1: 3901289-3911288 Brachypodium distachyon
Bradi1g05741 10.0kb downstream 10.0kb downstream 11527 true Bd1: 3889762-3901288 Brachypodium distachyon
Bradi1g05741 10.0kb downstream 10.0kb downstream 10000 false Bd1: 3889762-3899761 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031484 5273 Angiosperm View MSA
124469683 5269 Grass Singleton cluster - no MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain