Gene : Bradi1g05950 B. distachyon v3.1
Defline:  (1 of 3) PTHR11909//PTHR11909:SF131 - CASEIN KINASE-RELATED // CASEIN KINASE-LIKE PROTEIN-RELATED Genomic Order:  766
Name:  ? Bradi1g05950 Secondary Identifier:  ? PAC:32792375
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g05950 0.5kb upstream 0.5kb upstream 8680 true Bd1: 4009600-4018279 Brachypodium distachyon
Bradi1g05950 0.5kb upstream 0.5kb upstream 500 false Bd1: 4017780-4018279 Brachypodium distachyon
Bradi1g05950 0.5kb downstream 0.5kb downstream 8680 true Bd1: 4009100-4017779 Brachypodium distachyon
Bradi1g05950 0.5kb downstream 0.5kb downstream 500 false Bd1: 4009100-4009599 Brachypodium distachyon
Bradi1g05950 1.0kb upstream 1.0kb upstream 9180 true Bd1: 4009600-4018779 Brachypodium distachyon
Bradi1g05950 1.0kb upstream 1.0kb upstream 1000 false Bd1: 4017780-4018779 Brachypodium distachyon
Bradi1g05950 1.0kb downstream 1.0kb downstream 9180 true Bd1: 4008600-4017779 Brachypodium distachyon
Bradi1g05950 1.0kb downstream 1.0kb downstream 1000 false Bd1: 4008600-4009599 Brachypodium distachyon
Bradi1g05950 2.0kb upstream 2.0kb upstream 10180 true Bd1: 4009600-4019779 Brachypodium distachyon
Bradi1g05950 2.0kb upstream 2.0kb upstream 2000 false Bd1: 4017780-4019779 Brachypodium distachyon
Bradi1g05950 2.0kb downstream 2.0kb downstream 10180 true Bd1: 4007600-4017779 Brachypodium distachyon
Bradi1g05950 2.0kb downstream 2.0kb downstream 2000 false Bd1: 4007600-4009599 Brachypodium distachyon
Bradi1g05950 5.0kb upstream 5.0kb upstream 13180 true Bd1: 4009600-4022779 Brachypodium distachyon
Bradi1g05950 5.0kb upstream 5.0kb upstream 5000 false Bd1: 4017780-4022779 Brachypodium distachyon
Bradi1g05950 5.0kb downstream 5.0kb downstream 13180 true Bd1: 4004600-4017779 Brachypodium distachyon
Bradi1g05950 5.0kb downstream 5.0kb downstream 5000 false Bd1: 4004600-4009599 Brachypodium distachyon
Bradi1g05950 10.0kb upstream 10.0kb upstream 18180 true Bd1: 4009600-4027779 Brachypodium distachyon
Bradi1g05950 10.0kb upstream 10.0kb upstream 10000 false Bd1: 4017780-4027779 Brachypodium distachyon
Bradi1g05950 10.0kb downstream 10.0kb downstream 18180 true Bd1: 3999600-4017779 Brachypodium distachyon
Bradi1g05950 10.0kb downstream 10.0kb downstream 10000 false Bd1: 3999600-4009599 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041344 5273 Angiosperm View MSA
124568931 5269 Grass View MSA
121309833 5274 Embryophyte View MSA
123427857 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.824     High  
cufflinks 10.404     High  
cufflinks 11.595     High  
cufflinks 8.029        
cufflinks 6.185        
cufflinks 9.938     High  
cufflinks 9.24        
cufflinks 9.029        
cufflinks 9.502     High  
cufflinks 7.251        
cufflinks 9.951     High  
cufflinks 9.909     High  
cufflinks 10.017     High  
cufflinks 8.751     High  
cufflinks 9.532     High  
cufflinks 10.633     High  
cufflinks 6.661        
cufflinks 11.708     High High
cufflinks 5.853       Low
cufflinks 2.66       Low
cufflinks 7.628        
cufflinks 11.335     High  
cufflinks 8.583        
cufflinks 8.517        
cufflinks 8.211        
cufflinks 10.241        
cufflinks 11.808     High High
cufflinks 10.52        
cufflinks 10.585        
cufflinks 9.387        

0 Strain