Gene : Bradi1g06110 B. distachyon v3.1
Defline:  (1 of 2) K08517 - vesicle transport protein SEC22 (SEC22) Genomic Order:  787
Name:  ? Bradi1g06110 Secondary Identifier:  ? PAC:32801196
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g06110 0.5kb upstream 0.5kb upstream 4447 true Bd1: 4101728-4106174 Brachypodium distachyon
Bradi1g06110 0.5kb upstream 0.5kb upstream 500 false Bd1: 4101728-4102227 Brachypodium distachyon
Bradi1g06110 0.5kb downstream 0.5kb downstream 4447 true Bd1: 4102228-4106674 Brachypodium distachyon
Bradi1g06110 0.5kb downstream 0.5kb downstream 500 false Bd1: 4106175-4106674 Brachypodium distachyon
Bradi1g06110 1.0kb upstream 1.0kb upstream 4947 true Bd1: 4101228-4106174 Brachypodium distachyon
Bradi1g06110 1.0kb upstream 1.0kb upstream 1000 false Bd1: 4101228-4102227 Brachypodium distachyon
Bradi1g06110 1.0kb downstream 1.0kb downstream 4947 true Bd1: 4102228-4107174 Brachypodium distachyon
Bradi1g06110 1.0kb downstream 1.0kb downstream 1000 false Bd1: 4106175-4107174 Brachypodium distachyon
Bradi1g06110 2.0kb upstream 2.0kb upstream 5947 true Bd1: 4100228-4106174 Brachypodium distachyon
Bradi1g06110 2.0kb upstream 2.0kb upstream 2000 false Bd1: 4100228-4102227 Brachypodium distachyon
Bradi1g06110 2.0kb downstream 2.0kb downstream 5947 true Bd1: 4102228-4108174 Brachypodium distachyon
Bradi1g06110 2.0kb downstream 2.0kb downstream 2000 false Bd1: 4106175-4108174 Brachypodium distachyon
Bradi1g06110 5.0kb upstream 5.0kb upstream 8947 true Bd1: 4097228-4106174 Brachypodium distachyon
Bradi1g06110 5.0kb upstream 5.0kb upstream 5000 false Bd1: 4097228-4102227 Brachypodium distachyon
Bradi1g06110 5.0kb downstream 5.0kb downstream 8947 true Bd1: 4102228-4111174 Brachypodium distachyon
Bradi1g06110 5.0kb downstream 5.0kb downstream 5000 false Bd1: 4106175-4111174 Brachypodium distachyon
Bradi1g06110 10.0kb upstream 10.0kb upstream 13947 true Bd1: 4092228-4106174 Brachypodium distachyon
Bradi1g06110 10.0kb upstream 10.0kb upstream 10000 false Bd1: 4092228-4102227 Brachypodium distachyon
Bradi1g06110 10.0kb downstream 10.0kb downstream 13947 true Bd1: 4102228-4116174 Brachypodium distachyon
Bradi1g06110 10.0kb downstream 10.0kb downstream 10000 false Bd1: 4106175-4116174 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584489 5269 Grass View MSA
122046474 5273 Angiosperm View MSA
121346313 5274 Embryophyte View MSA
123424515 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.603       High
cufflinks 4.2        
cufflinks 3.976        
cufflinks 4.104        
cufflinks 3.437        
cufflinks 3.763        
cufflinks 4.246        
cufflinks 3.707        
cufflinks 3.468        
cufflinks 3.435        
cufflinks 3.188        
cufflinks 3.86        
cufflinks 2.595       Low
cufflinks 2.758       Low
cufflinks 3.582        
cufflinks 3.98        
cufflinks 4.949        
cufflinks 5.835       High
cufflinks 7.079       High
cufflinks 1.955       Low
cufflinks 4.933        
cufflinks 3.892        
cufflinks 3.964        
cufflinks 4.078        
cufflinks 4.093        
cufflinks 3.927        
cufflinks 3.373        
cufflinks 3.772        
cufflinks 3.373        
cufflinks 5.438       High

0 Strain