Gene : Bradi1g01007 B. distachyon v3.1
Defline:  (1 of 1) PTHR12604:SF4 - X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 Genomic Order:  109
Name:  ? Bradi1g01007 Secondary Identifier:  ? PAC:32799121
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g01007 0.5kb upstream 0.5kb upstream 6404 true Bd1: 693092-699495 Brachypodium distachyon
Bradi1g01007 0.5kb upstream 0.5kb upstream 500 false Bd1: 698996-699495 Brachypodium distachyon
Bradi1g01007 0.5kb downstream 0.5kb downstream 6404 true Bd1: 692592-698995 Brachypodium distachyon
Bradi1g01007 0.5kb downstream 0.5kb downstream 500 false Bd1: 692592-693091 Brachypodium distachyon
Bradi1g01007 1.0kb upstream 1.0kb upstream 6904 true Bd1: 693092-699995 Brachypodium distachyon
Bradi1g01007 1.0kb upstream 1.0kb upstream 1000 false Bd1: 698996-699995 Brachypodium distachyon
Bradi1g01007 1.0kb downstream 1.0kb downstream 6904 true Bd1: 692092-698995 Brachypodium distachyon
Bradi1g01007 1.0kb downstream 1.0kb downstream 1000 false Bd1: 692092-693091 Brachypodium distachyon
Bradi1g01007 2.0kb upstream 2.0kb upstream 7904 true Bd1: 693092-700995 Brachypodium distachyon
Bradi1g01007 2.0kb upstream 2.0kb upstream 2000 false Bd1: 698996-700995 Brachypodium distachyon
Bradi1g01007 2.0kb downstream 2.0kb downstream 7904 true Bd1: 691092-698995 Brachypodium distachyon
Bradi1g01007 2.0kb downstream 2.0kb downstream 2000 false Bd1: 691092-693091 Brachypodium distachyon
Bradi1g01007 5.0kb upstream 5.0kb upstream 10904 true Bd1: 693092-703995 Brachypodium distachyon
Bradi1g01007 5.0kb upstream 5.0kb upstream 5000 false Bd1: 698996-703995 Brachypodium distachyon
Bradi1g01007 5.0kb downstream 5.0kb downstream 10904 true Bd1: 688092-698995 Brachypodium distachyon
Bradi1g01007 5.0kb downstream 5.0kb downstream 5000 false Bd1: 688092-693091 Brachypodium distachyon
Bradi1g01007 10.0kb upstream 10.0kb upstream 15904 true Bd1: 693092-708995 Brachypodium distachyon
Bradi1g01007 10.0kb upstream 10.0kb upstream 10000 false Bd1: 698996-708995 Brachypodium distachyon
Bradi1g01007 10.0kb downstream 10.0kb downstream 15904 true Bd1: 683092-698995 Brachypodium distachyon
Bradi1g01007 10.0kb downstream 10.0kb downstream 10000 false Bd1: 683092-693091 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574679 5269 Grass View MSA
122050480 5273 Angiosperm View MSA
121345940 5274 Embryophyte View MSA
123427822 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.245        
cufflinks 0.52        
cufflinks 0.547        
cufflinks 0.463        
cufflinks 0.229        
cufflinks 0.444        
cufflinks 0.413        
cufflinks 0.337        
cufflinks 0.423        
cufflinks 0.345        
cufflinks 0.178        
cufflinks 0.398        
cufflinks 0.12       Low
cufflinks 0.15       Low
cufflinks 0.125       Low
cufflinks 0.479        
cufflinks 0.314        
cufflinks 0.849       High
cufflinks 0.449        
cufflinks 0.029     Low Low
cufflinks 0.375        
cufflinks 0.549        
cufflinks 0.348        
cufflinks 0.35        
cufflinks 0.451        
cufflinks 0.458        
cufflinks 0.092       Low
cufflinks 0.47        
cufflinks 0.485        
cufflinks 0.6        

0 Strain