Gene : Bradi1g01730 B. distachyon v3.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  208
Name:  ? Bradi1g01730 Secondary Identifier:  ? PAC:32799941
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g01730 0.5kb upstream 0.5kb upstream 3597 true Bd1: 1141359-1144955 Brachypodium distachyon
Bradi1g01730 0.5kb upstream 0.5kb upstream 500 false Bd1: 1141359-1141858 Brachypodium distachyon
Bradi1g01730 0.5kb downstream 0.5kb downstream 3597 true Bd1: 1141859-1145455 Brachypodium distachyon
Bradi1g01730 0.5kb downstream 0.5kb downstream 500 false Bd1: 1144956-1145455 Brachypodium distachyon
Bradi1g01730 1.0kb upstream 1.0kb upstream 4097 true Bd1: 1140859-1144955 Brachypodium distachyon
Bradi1g01730 1.0kb upstream 1.0kb upstream 1000 false Bd1: 1140859-1141858 Brachypodium distachyon
Bradi1g01730 1.0kb downstream 1.0kb downstream 4097 true Bd1: 1141859-1145955 Brachypodium distachyon
Bradi1g01730 1.0kb downstream 1.0kb downstream 1000 false Bd1: 1144956-1145955 Brachypodium distachyon
Bradi1g01730 2.0kb upstream 2.0kb upstream 5097 true Bd1: 1139859-1144955 Brachypodium distachyon
Bradi1g01730 2.0kb upstream 2.0kb upstream 2000 false Bd1: 1139859-1141858 Brachypodium distachyon
Bradi1g01730 2.0kb downstream 2.0kb downstream 5097 true Bd1: 1141859-1146955 Brachypodium distachyon
Bradi1g01730 2.0kb downstream 2.0kb downstream 2000 false Bd1: 1144956-1146955 Brachypodium distachyon
Bradi1g01730 5.0kb upstream 5.0kb upstream 8097 true Bd1: 1136859-1144955 Brachypodium distachyon
Bradi1g01730 5.0kb upstream 5.0kb upstream 5000 false Bd1: 1136859-1141858 Brachypodium distachyon
Bradi1g01730 5.0kb downstream 5.0kb downstream 8097 true Bd1: 1141859-1149955 Brachypodium distachyon
Bradi1g01730 5.0kb downstream 5.0kb downstream 5000 false Bd1: 1144956-1149955 Brachypodium distachyon
Bradi1g01730 10.0kb upstream 10.0kb upstream 13097 true Bd1: 1131859-1144955 Brachypodium distachyon
Bradi1g01730 10.0kb upstream 10.0kb upstream 10000 false Bd1: 1131859-1141858 Brachypodium distachyon
Bradi1g01730 10.0kb downstream 10.0kb downstream 13097 true Bd1: 1141859-1154955 Brachypodium distachyon
Bradi1g01730 10.0kb downstream 10.0kb downstream 10000 false Bd1: 1144956-1154955 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571390 5269 Grass View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.006        
cufflinks 2.182        
cufflinks 1.944        
cufflinks 2.658        
cufflinks 2.556        
cufflinks 2.008        
cufflinks 1.797        
cufflinks 1.975        
cufflinks 1.949        
cufflinks 2.922        
cufflinks 1.352       Low
cufflinks 2.085        
cufflinks 1.115       Low
cufflinks 1.175       Low
cufflinks 3.347       High
cufflinks 1.476       Low
cufflinks 2.747        
cufflinks 2.343        
cufflinks 2.558        
cufflinks 3.277       High
cufflinks 2.475        
cufflinks 1.922        
cufflinks 2.066        
cufflinks 2.044        
cufflinks 2.132        
cufflinks 2.551        
cufflinks 1.623       Low
cufflinks 2.705        
cufflinks 2.269        
cufflinks 2.722        

0 Strain