Gene : Bradi1g02090 B. distachyon v3.1
Defline:  (1 of 62) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  258
Name:  ? Bradi1g02090 Secondary Identifier:  ? PAC:32797519
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g02090 0.5kb upstream 0.5kb upstream 2897 true Bd1: 1416273-1419169 Brachypodium distachyon
Bradi1g02090 0.5kb upstream 0.5kb upstream 500 false Bd1: 1418670-1419169 Brachypodium distachyon
Bradi1g02090 0.5kb downstream 0.5kb downstream 2897 true Bd1: 1415773-1418669 Brachypodium distachyon
Bradi1g02090 0.5kb downstream 0.5kb downstream 500 false Bd1: 1415773-1416272 Brachypodium distachyon
Bradi1g02090 1.0kb upstream 1.0kb upstream 3397 true Bd1: 1416273-1419669 Brachypodium distachyon
Bradi1g02090 1.0kb upstream 1.0kb upstream 1000 false Bd1: 1418670-1419669 Brachypodium distachyon
Bradi1g02090 1.0kb downstream 1.0kb downstream 3397 true Bd1: 1415273-1418669 Brachypodium distachyon
Bradi1g02090 1.0kb downstream 1.0kb downstream 1000 false Bd1: 1415273-1416272 Brachypodium distachyon
Bradi1g02090 2.0kb upstream 2.0kb upstream 4397 true Bd1: 1416273-1420669 Brachypodium distachyon
Bradi1g02090 2.0kb upstream 2.0kb upstream 2000 false Bd1: 1418670-1420669 Brachypodium distachyon
Bradi1g02090 2.0kb downstream 2.0kb downstream 4397 true Bd1: 1414273-1418669 Brachypodium distachyon
Bradi1g02090 2.0kb downstream 2.0kb downstream 2000 false Bd1: 1414273-1416272 Brachypodium distachyon
Bradi1g02090 5.0kb upstream 5.0kb upstream 7397 true Bd1: 1416273-1423669 Brachypodium distachyon
Bradi1g02090 5.0kb upstream 5.0kb upstream 5000 false Bd1: 1418670-1423669 Brachypodium distachyon
Bradi1g02090 5.0kb downstream 5.0kb downstream 7397 true Bd1: 1411273-1418669 Brachypodium distachyon
Bradi1g02090 5.0kb downstream 5.0kb downstream 5000 false Bd1: 1411273-1416272 Brachypodium distachyon
Bradi1g02090 10.0kb upstream 10.0kb upstream 12397 true Bd1: 1416273-1428669 Brachypodium distachyon
Bradi1g02090 10.0kb upstream 10.0kb upstream 10000 false Bd1: 1418670-1428669 Brachypodium distachyon
Bradi1g02090 10.0kb downstream 10.0kb downstream 12397 true Bd1: 1406273-1418669 Brachypodium distachyon
Bradi1g02090 10.0kb downstream 10.0kb downstream 10000 false Bd1: 1406273-1416272 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571531 5269 Grass View MSA
122045066 5273 Angiosperm View MSA
121350373 5274 Embryophyte View MSA
123381702 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.844     High  
cufflinks 14.029     High  
cufflinks 16.252     High  
cufflinks 14.556     High  
cufflinks 20.867     High  
cufflinks 14.336     High  
cufflinks 14.857     High  
cufflinks 13.288     High  
cufflinks 13.35     High  
cufflinks 10.395     High  
cufflinks 7.84       Low
cufflinks 15.844     High  
cufflinks 6.738       Low
cufflinks 5.303       Low
cufflinks 12.578     High  
cufflinks 15.577     High  
cufflinks 16.864     High  
cufflinks 26.349     High High
cufflinks 33.82     High High
cufflinks 26.654     High High
cufflinks 33.662     High High
cufflinks 13.217     High  
cufflinks 13.693     High  
cufflinks 16.056     High  
cufflinks 13.173     High  
cufflinks 14.598     High  
cufflinks 6.167       Low
cufflinks 12.784     High  
cufflinks 12.472     High  
cufflinks 38.136     High High

0 Strain