Gene : Bradi1g02740 B. distachyon v3.1
Defline:  (1 of 2) 6.5.1.4 - RNA 3'-terminal-phosphate cyclase (ATP) / RNA-3'-phosphate cyclase Genomic Order:  345
Name:  ? Bradi1g02740 Secondary Identifier:  ? PAC:32804844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g02740 0.5kb upstream 0.5kb upstream 3319 true Bd1: 1843989-1847307 Brachypodium distachyon
Bradi1g02740 0.5kb upstream 0.5kb upstream 500 false Bd1: 1843989-1844488 Brachypodium distachyon
Bradi1g02740 0.5kb downstream 0.5kb downstream 3319 true Bd1: 1844489-1847807 Brachypodium distachyon
Bradi1g02740 0.5kb downstream 0.5kb downstream 500 false Bd1: 1847308-1847807 Brachypodium distachyon
Bradi1g02740 1.0kb upstream 1.0kb upstream 3819 true Bd1: 1843489-1847307 Brachypodium distachyon
Bradi1g02740 1.0kb upstream 1.0kb upstream 1000 false Bd1: 1843489-1844488 Brachypodium distachyon
Bradi1g02740 1.0kb downstream 1.0kb downstream 3819 true Bd1: 1844489-1848307 Brachypodium distachyon
Bradi1g02740 1.0kb downstream 1.0kb downstream 1000 false Bd1: 1847308-1848307 Brachypodium distachyon
Bradi1g02740 2.0kb upstream 2.0kb upstream 4819 true Bd1: 1842489-1847307 Brachypodium distachyon
Bradi1g02740 2.0kb upstream 2.0kb upstream 2000 false Bd1: 1842489-1844488 Brachypodium distachyon
Bradi1g02740 2.0kb downstream 2.0kb downstream 4819 true Bd1: 1844489-1849307 Brachypodium distachyon
Bradi1g02740 2.0kb downstream 2.0kb downstream 2000 false Bd1: 1847308-1849307 Brachypodium distachyon
Bradi1g02740 5.0kb upstream 5.0kb upstream 7819 true Bd1: 1839489-1847307 Brachypodium distachyon
Bradi1g02740 5.0kb upstream 5.0kb upstream 5000 false Bd1: 1839489-1844488 Brachypodium distachyon
Bradi1g02740 5.0kb downstream 5.0kb downstream 7819 true Bd1: 1844489-1852307 Brachypodium distachyon
Bradi1g02740 5.0kb downstream 5.0kb downstream 5000 false Bd1: 1847308-1852307 Brachypodium distachyon
Bradi1g02740 10.0kb upstream 10.0kb upstream 12819 true Bd1: 1834489-1847307 Brachypodium distachyon
Bradi1g02740 10.0kb upstream 10.0kb upstream 10000 false Bd1: 1834489-1844488 Brachypodium distachyon
Bradi1g02740 10.0kb downstream 10.0kb downstream 12819 true Bd1: 1844489-1857307 Brachypodium distachyon
Bradi1g02740 10.0kb downstream 10.0kb downstream 10000 false Bd1: 1847308-1857307 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026420 5273 Angiosperm View MSA
124575029 5269 Grass View MSA
121344300 5274 Embryophyte View MSA
123427148 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.007        
cufflinks 11.078     High  
cufflinks 10.639     High  
cufflinks 12.269     High  
cufflinks 4.24       Low
cufflinks 9.47     High  
cufflinks 9.945     High  
cufflinks 9.53     High  
cufflinks 8.774        
cufflinks 7.464        
cufflinks 5.075       Low
cufflinks 7.67        
cufflinks 3.764       Low
cufflinks 4.952       Low
cufflinks 6.43        
cufflinks 9.01        
cufflinks 8.773        
cufflinks 13.565     High High
cufflinks 9.36        
cufflinks 2.37       Low
cufflinks 11.137     High  
cufflinks 7.74        
cufflinks 8.226        
cufflinks 7.803        
cufflinks 10.257     High  
cufflinks 11.888     High  
cufflinks 6.4        
cufflinks 10.147        
cufflinks 9.052        
cufflinks 10.366        

0 Strain