Gene : Bradi1g02780 B. distachyon v3.1
Defline:  (1 of 1) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  350
Name:  ? Bradi1g02780 Secondary Identifier:  ? PAC:32799599
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6829 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g02780 0.5kb upstream 0.5kb upstream 3769 true Bd1: 1871347-1875115 Brachypodium distachyon
Bradi1g02780 0.5kb upstream 0.5kb upstream 500 false Bd1: 1874616-1875115 Brachypodium distachyon
Bradi1g02780 0.5kb downstream 0.5kb downstream 3769 true Bd1: 1870847-1874615 Brachypodium distachyon
Bradi1g02780 0.5kb downstream 0.5kb downstream 500 false Bd1: 1870847-1871346 Brachypodium distachyon
Bradi1g02780 1.0kb upstream 1.0kb upstream 4269 true Bd1: 1871347-1875615 Brachypodium distachyon
Bradi1g02780 1.0kb upstream 1.0kb upstream 1000 false Bd1: 1874616-1875615 Brachypodium distachyon
Bradi1g02780 1.0kb downstream 1.0kb downstream 4269 true Bd1: 1870347-1874615 Brachypodium distachyon
Bradi1g02780 1.0kb downstream 1.0kb downstream 1000 false Bd1: 1870347-1871346 Brachypodium distachyon
Bradi1g02780 2.0kb upstream 2.0kb upstream 5269 true Bd1: 1871347-1876615 Brachypodium distachyon
Bradi1g02780 2.0kb upstream 2.0kb upstream 2000 false Bd1: 1874616-1876615 Brachypodium distachyon
Bradi1g02780 2.0kb downstream 2.0kb downstream 5269 true Bd1: 1869347-1874615 Brachypodium distachyon
Bradi1g02780 2.0kb downstream 2.0kb downstream 2000 false Bd1: 1869347-1871346 Brachypodium distachyon
Bradi1g02780 5.0kb upstream 5.0kb upstream 8269 true Bd1: 1871347-1879615 Brachypodium distachyon
Bradi1g02780 5.0kb upstream 5.0kb upstream 5000 false Bd1: 1874616-1879615 Brachypodium distachyon
Bradi1g02780 5.0kb downstream 5.0kb downstream 8269 true Bd1: 1866347-1874615 Brachypodium distachyon
Bradi1g02780 5.0kb downstream 5.0kb downstream 5000 false Bd1: 1866347-1871346 Brachypodium distachyon
Bradi1g02780 10.0kb upstream 10.0kb upstream 13269 true Bd1: 1871347-1884615 Brachypodium distachyon
Bradi1g02780 10.0kb upstream 10.0kb upstream 10000 false Bd1: 1874616-1884615 Brachypodium distachyon
Bradi1g02780 10.0kb downstream 10.0kb downstream 13269 true Bd1: 1861347-1874615 Brachypodium distachyon
Bradi1g02780 10.0kb downstream 10.0kb downstream 10000 false Bd1: 1861347-1871346 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581459 5269 Grass View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.218        
cufflinks 3.311        
cufflinks 3.365        
cufflinks 3.032        
cufflinks 2.09        
cufflinks 3.205        
cufflinks 3.333        
cufflinks 2.733        
cufflinks 3.356        
cufflinks 2.174        
cufflinks 1.53        
cufflinks 2.01        
cufflinks 1.154       Low
cufflinks 1.364       Low
cufflinks 1.239       Low
cufflinks 3.189        
cufflinks 2.74        
cufflinks 4.581       High
cufflinks 3.26        
cufflinks 0.689       Low
cufflinks 3.142        
cufflinks 2.839        
cufflinks 2.647        
cufflinks 2.287        
cufflinks 3.271        
cufflinks 2.711        
cufflinks 1.127       Low
cufflinks 2.845        
cufflinks 2.349        
cufflinks 2.711        

0 Strain