Gene : Bradi1g09177 B. distachyon v3.1
Defline:  (1 of 1) PTHR12565//PTHR12565:SF164 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  1177
Name:  ? Bradi1g09177 Secondary Identifier:  ? PAC:32797458
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09177 0.5kb upstream 0.5kb upstream 11095 true Bd1: 6553961-6565055 Brachypodium distachyon
Bradi1g09177 0.5kb upstream 0.5kb upstream 500 false Bd1: 6564556-6565055 Brachypodium distachyon
Bradi1g09177 0.5kb downstream 0.5kb downstream 11095 true Bd1: 6553461-6564555 Brachypodium distachyon
Bradi1g09177 0.5kb downstream 0.5kb downstream 500 false Bd1: 6553461-6553960 Brachypodium distachyon
Bradi1g09177 1.0kb upstream 1.0kb upstream 11595 true Bd1: 6553961-6565555 Brachypodium distachyon
Bradi1g09177 1.0kb upstream 1.0kb upstream 1000 false Bd1: 6564556-6565555 Brachypodium distachyon
Bradi1g09177 1.0kb downstream 1.0kb downstream 11595 true Bd1: 6552961-6564555 Brachypodium distachyon
Bradi1g09177 1.0kb downstream 1.0kb downstream 1000 false Bd1: 6552961-6553960 Brachypodium distachyon
Bradi1g09177 2.0kb upstream 2.0kb upstream 12595 true Bd1: 6553961-6566555 Brachypodium distachyon
Bradi1g09177 2.0kb upstream 2.0kb upstream 2000 false Bd1: 6564556-6566555 Brachypodium distachyon
Bradi1g09177 2.0kb downstream 2.0kb downstream 12595 true Bd1: 6551961-6564555 Brachypodium distachyon
Bradi1g09177 2.0kb downstream 2.0kb downstream 2000 false Bd1: 6551961-6553960 Brachypodium distachyon
Bradi1g09177 5.0kb upstream 5.0kb upstream 15595 true Bd1: 6553961-6569555 Brachypodium distachyon
Bradi1g09177 5.0kb upstream 5.0kb upstream 5000 false Bd1: 6564556-6569555 Brachypodium distachyon
Bradi1g09177 5.0kb downstream 5.0kb downstream 15595 true Bd1: 6548961-6564555 Brachypodium distachyon
Bradi1g09177 5.0kb downstream 5.0kb downstream 5000 false Bd1: 6548961-6553960 Brachypodium distachyon
Bradi1g09177 10.0kb upstream 10.0kb upstream 20595 true Bd1: 6553961-6574555 Brachypodium distachyon
Bradi1g09177 10.0kb upstream 10.0kb upstream 10000 false Bd1: 6564556-6574555 Brachypodium distachyon
Bradi1g09177 10.0kb downstream 10.0kb downstream 20595 true Bd1: 6543961-6564555 Brachypodium distachyon
Bradi1g09177 10.0kb downstream 10.0kb downstream 10000 false Bd1: 6543961-6553960 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586763 5269 Grass View MSA
122043534 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.112        
cufflinks 0.402        
cufflinks 0.355        
cufflinks 0.375        
cufflinks 15.558     High High
cufflinks 0.241       Low
cufflinks 0.33        
cufflinks 3.601       High
cufflinks 0.36        
cufflinks 0.255       Low
cufflinks 8.788     High High
cufflinks 8.638       High
cufflinks 1.715        
cufflinks 1.942        
cufflinks 5.42       High
cufflinks 0.555        
cufflinks 0.389        
cufflinks 1.476        
cufflinks 3.233        
cufflinks 10.593       High
cufflinks 0.391        
cufflinks 0.274       Low
cufflinks 0.455        
cufflinks 0.28       Low
cufflinks 0.386        
cufflinks 0.429        
cufflinks 0.405        
cufflinks 0.472        
cufflinks 0.275       Low
cufflinks 3.248        

0 Strain