Gene : Bradi1g09357 B. distachyon v3.1
Defline:  (1 of 9) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1200
Name:  ? Bradi1g09357 Secondary Identifier:  ? PAC:32804120
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09357 0.5kb upstream 0.5kb upstream 4271 true Bd1: 6731554-6735824 Brachypodium distachyon
Bradi1g09357 0.5kb upstream 0.5kb upstream 500 false Bd1: 6731554-6732053 Brachypodium distachyon
Bradi1g09357 0.5kb downstream 0.5kb downstream 4271 true Bd1: 6732054-6736324 Brachypodium distachyon
Bradi1g09357 0.5kb downstream 0.5kb downstream 500 false Bd1: 6735825-6736324 Brachypodium distachyon
Bradi1g09357 1.0kb upstream 1.0kb upstream 4771 true Bd1: 6731054-6735824 Brachypodium distachyon
Bradi1g09357 1.0kb upstream 1.0kb upstream 1000 false Bd1: 6731054-6732053 Brachypodium distachyon
Bradi1g09357 1.0kb downstream 1.0kb downstream 4771 true Bd1: 6732054-6736824 Brachypodium distachyon
Bradi1g09357 1.0kb downstream 1.0kb downstream 1000 false Bd1: 6735825-6736824 Brachypodium distachyon
Bradi1g09357 2.0kb upstream 2.0kb upstream 5771 true Bd1: 6730054-6735824 Brachypodium distachyon
Bradi1g09357 2.0kb upstream 2.0kb upstream 2000 false Bd1: 6730054-6732053 Brachypodium distachyon
Bradi1g09357 2.0kb downstream 2.0kb downstream 5771 true Bd1: 6732054-6737824 Brachypodium distachyon
Bradi1g09357 2.0kb downstream 2.0kb downstream 2000 false Bd1: 6735825-6737824 Brachypodium distachyon
Bradi1g09357 5.0kb upstream 5.0kb upstream 8771 true Bd1: 6727054-6735824 Brachypodium distachyon
Bradi1g09357 5.0kb upstream 5.0kb upstream 5000 false Bd1: 6727054-6732053 Brachypodium distachyon
Bradi1g09357 5.0kb downstream 5.0kb downstream 8771 true Bd1: 6732054-6740824 Brachypodium distachyon
Bradi1g09357 5.0kb downstream 5.0kb downstream 5000 false Bd1: 6735825-6740824 Brachypodium distachyon
Bradi1g09357 10.0kb upstream 10.0kb upstream 13771 true Bd1: 6722054-6735824 Brachypodium distachyon
Bradi1g09357 10.0kb upstream 10.0kb upstream 10000 false Bd1: 6722054-6732053 Brachypodium distachyon
Bradi1g09357 10.0kb downstream 10.0kb downstream 13771 true Bd1: 6732054-6745824 Brachypodium distachyon
Bradi1g09357 10.0kb downstream 10.0kb downstream 10000 false Bd1: 6735825-6745824 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583024 5269 Grass View MSA
122045330 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.988        
cufflinks 4.552        
cufflinks 4.97       High
cufflinks 4.422        
cufflinks 1.202       Low
cufflinks 3.503        
cufflinks 3.406        
cufflinks 3.65        
cufflinks 3.153        
cufflinks 3.043        
cufflinks 3.085        
cufflinks 4.466        
cufflinks 3.474        
cufflinks 3.278        
cufflinks 3.318        
cufflinks 3.69        
cufflinks 2.132        
cufflinks 0.878       Low
cufflinks 1.431       Low
cufflinks 1.255       Low
cufflinks 2.037        
cufflinks 4.572        
cufflinks 3.809        
cufflinks 3.303        
cufflinks 3.2        
cufflinks 4.821       High
cufflinks 3.352        
cufflinks 4.706        
cufflinks 4.959       High
cufflinks 3.468        

0 Strain