Gene : Bradi1g09300 B. distachyon v3.1
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  1193
Name:  ? Bradi1g09300 Secondary Identifier:  ? PAC:32792582
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLYSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-2161 Brachypodium distachyon pathologic  
Bdistachyon PWY-3841 Brachypodium distachyon pathologic  
Bdistachyon SER-GLYSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09300 0.5kb upstream 0.5kb upstream 5110 true Bd1: 6671636-6676745 Brachypodium distachyon
Bradi1g09300 0.5kb upstream 0.5kb upstream 500 false Bd1: 6676246-6676745 Brachypodium distachyon
Bradi1g09300 0.5kb downstream 0.5kb downstream 5110 true Bd1: 6671136-6676245 Brachypodium distachyon
Bradi1g09300 0.5kb downstream 0.5kb downstream 500 false Bd1: 6671136-6671635 Brachypodium distachyon
Bradi1g09300 1.0kb upstream 1.0kb upstream 5610 true Bd1: 6671636-6677245 Brachypodium distachyon
Bradi1g09300 1.0kb upstream 1.0kb upstream 1000 false Bd1: 6676246-6677245 Brachypodium distachyon
Bradi1g09300 1.0kb downstream 1.0kb downstream 5610 true Bd1: 6670636-6676245 Brachypodium distachyon
Bradi1g09300 1.0kb downstream 1.0kb downstream 1000 false Bd1: 6670636-6671635 Brachypodium distachyon
Bradi1g09300 2.0kb upstream 2.0kb upstream 6610 true Bd1: 6671636-6678245 Brachypodium distachyon
Bradi1g09300 2.0kb upstream 2.0kb upstream 2000 false Bd1: 6676246-6678245 Brachypodium distachyon
Bradi1g09300 2.0kb downstream 2.0kb downstream 6610 true Bd1: 6669636-6676245 Brachypodium distachyon
Bradi1g09300 2.0kb downstream 2.0kb downstream 2000 false Bd1: 6669636-6671635 Brachypodium distachyon
Bradi1g09300 5.0kb upstream 5.0kb upstream 9610 true Bd1: 6671636-6681245 Brachypodium distachyon
Bradi1g09300 5.0kb upstream 5.0kb upstream 5000 false Bd1: 6676246-6681245 Brachypodium distachyon
Bradi1g09300 5.0kb downstream 5.0kb downstream 9610 true Bd1: 6666636-6676245 Brachypodium distachyon
Bradi1g09300 5.0kb downstream 5.0kb downstream 5000 false Bd1: 6666636-6671635 Brachypodium distachyon
Bradi1g09300 10.0kb upstream 10.0kb upstream 14610 true Bd1: 6671636-6686245 Brachypodium distachyon
Bradi1g09300 10.0kb upstream 10.0kb upstream 10000 false Bd1: 6676246-6686245 Brachypodium distachyon
Bradi1g09300 10.0kb downstream 10.0kb downstream 14610 true Bd1: 6661636-6676245 Brachypodium distachyon
Bradi1g09300 10.0kb downstream 10.0kb downstream 10000 false Bd1: 6661636-6671635 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570013 5269 Grass View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 656.17     High  
cufflinks 631.651     High  
cufflinks 1033.521     High  
cufflinks 855.106     High  
cufflinks 444.44     High  
cufflinks 795.192     High  
cufflinks 618.969     High  
cufflinks 898.784     High  
cufflinks 916.071     High  
cufflinks 842.78     High  
cufflinks 1770.372     High High
cufflinks 908.33     High  
cufflinks 1288.956     High  
cufflinks 1761.746     High High
cufflinks 917.03     High  
cufflinks 754.908     High  
cufflinks 765.435     High  
cufflinks 68.076     High Low
cufflinks 320.585     High  
cufflinks 255.41     High Low
cufflinks 322.11     High  
cufflinks 822.248     High  
cufflinks 938.702     High  
cufflinks 961.883     High  
cufflinks 791.947     High  
cufflinks 1110.684     High  
cufflinks 1531.199     High High
cufflinks 1034.893     High  
cufflinks 926.318     High  
cufflinks 193.607     High Low

0 Strain