Gene : Bradi1g09670 B. distachyon v3.1
Defline:  (1 of 1) PTHR23107//PTHR23107:SF3 - SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN Genomic Order:  1238
Name:  ? Bradi1g09670 Secondary Identifier:  ? PAC:32806093
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09670 0.5kb upstream 0.5kb upstream 4141 true Bd1: 6924985-6929125 Brachypodium distachyon
Bradi1g09670 0.5kb upstream 0.5kb upstream 500 false Bd1: 6928626-6929125 Brachypodium distachyon
Bradi1g09670 0.5kb downstream 0.5kb downstream 4141 true Bd1: 6924485-6928625 Brachypodium distachyon
Bradi1g09670 0.5kb downstream 0.5kb downstream 500 false Bd1: 6924485-6924984 Brachypodium distachyon
Bradi1g09670 1.0kb upstream 1.0kb upstream 4641 true Bd1: 6924985-6929625 Brachypodium distachyon
Bradi1g09670 1.0kb upstream 1.0kb upstream 1000 false Bd1: 6928626-6929625 Brachypodium distachyon
Bradi1g09670 1.0kb downstream 1.0kb downstream 4641 true Bd1: 6923985-6928625 Brachypodium distachyon
Bradi1g09670 1.0kb downstream 1.0kb downstream 1000 false Bd1: 6923985-6924984 Brachypodium distachyon
Bradi1g09670 2.0kb upstream 2.0kb upstream 5641 true Bd1: 6924985-6930625 Brachypodium distachyon
Bradi1g09670 2.0kb upstream 2.0kb upstream 2000 false Bd1: 6928626-6930625 Brachypodium distachyon
Bradi1g09670 2.0kb downstream 2.0kb downstream 5641 true Bd1: 6922985-6928625 Brachypodium distachyon
Bradi1g09670 2.0kb downstream 2.0kb downstream 2000 false Bd1: 6922985-6924984 Brachypodium distachyon
Bradi1g09670 5.0kb upstream 5.0kb upstream 8641 true Bd1: 6924985-6933625 Brachypodium distachyon
Bradi1g09670 5.0kb upstream 5.0kb upstream 5000 false Bd1: 6928626-6933625 Brachypodium distachyon
Bradi1g09670 5.0kb downstream 5.0kb downstream 8641 true Bd1: 6919985-6928625 Brachypodium distachyon
Bradi1g09670 5.0kb downstream 5.0kb downstream 5000 false Bd1: 6919985-6924984 Brachypodium distachyon
Bradi1g09670 10.0kb upstream 10.0kb upstream 13641 true Bd1: 6924985-6938625 Brachypodium distachyon
Bradi1g09670 10.0kb upstream 10.0kb upstream 10000 false Bd1: 6928626-6938625 Brachypodium distachyon
Bradi1g09670 10.0kb downstream 10.0kb downstream 13641 true Bd1: 6914985-6928625 Brachypodium distachyon
Bradi1g09670 10.0kb downstream 10.0kb downstream 10000 false Bd1: 6914985-6924984 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589266 5269 Grass View MSA
122045386 5273 Angiosperm View MSA
121351391 5274 Embryophyte View MSA
123426567 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.405        
cufflinks 4.441        
cufflinks 3.443        
cufflinks 3.862        
cufflinks 0.545        
cufflinks 4.08        
cufflinks 4.026        
cufflinks 2.192        
cufflinks 3.912        
cufflinks 3.852        
cufflinks 0.033     Low Low
cufflinks 2.146        
cufflinks 0.018     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.389        
cufflinks 3.63        
cufflinks 4.027        
cufflinks 4.724        
cufflinks 3.133        
cufflinks 0.72        
cufflinks 6.284        
cufflinks 3.52        
cufflinks 2.086        
cufflinks 2.339        
cufflinks 4.614        
cufflinks 3.937        
cufflinks 0.034     Low Low
cufflinks 3.428        
cufflinks 3.435        
cufflinks 5.697        

0 Strain