Gene : Bradi1g09790 B. distachyon v3.1
Defline:  (1 of 3) PF05479 - Photosystem I reaction centre subunit N (PSAN or PSI-N) (PsaN) Genomic Order:  1252
Name:  ? Bradi1g09790 Secondary Identifier:  ? PAC:32805285
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09790 0.5kb upstream 0.5kb upstream 2077 true Bd1: 7043456-7045532 Brachypodium distachyon
Bradi1g09790 0.5kb upstream 0.5kb upstream 500 false Bd1: 7045033-7045532 Brachypodium distachyon
Bradi1g09790 0.5kb downstream 0.5kb downstream 2077 true Bd1: 7042956-7045032 Brachypodium distachyon
Bradi1g09790 0.5kb downstream 0.5kb downstream 500 false Bd1: 7042956-7043455 Brachypodium distachyon
Bradi1g09790 1.0kb upstream 1.0kb upstream 2577 true Bd1: 7043456-7046032 Brachypodium distachyon
Bradi1g09790 1.0kb upstream 1.0kb upstream 1000 false Bd1: 7045033-7046032 Brachypodium distachyon
Bradi1g09790 1.0kb downstream 1.0kb downstream 2577 true Bd1: 7042456-7045032 Brachypodium distachyon
Bradi1g09790 1.0kb downstream 1.0kb downstream 1000 false Bd1: 7042456-7043455 Brachypodium distachyon
Bradi1g09790 2.0kb upstream 2.0kb upstream 3577 true Bd1: 7043456-7047032 Brachypodium distachyon
Bradi1g09790 2.0kb upstream 2.0kb upstream 2000 false Bd1: 7045033-7047032 Brachypodium distachyon
Bradi1g09790 2.0kb downstream 2.0kb downstream 3577 true Bd1: 7041456-7045032 Brachypodium distachyon
Bradi1g09790 2.0kb downstream 2.0kb downstream 2000 false Bd1: 7041456-7043455 Brachypodium distachyon
Bradi1g09790 5.0kb upstream 5.0kb upstream 6577 true Bd1: 7043456-7050032 Brachypodium distachyon
Bradi1g09790 5.0kb upstream 5.0kb upstream 5000 false Bd1: 7045033-7050032 Brachypodium distachyon
Bradi1g09790 5.0kb downstream 5.0kb downstream 6577 true Bd1: 7038456-7045032 Brachypodium distachyon
Bradi1g09790 5.0kb downstream 5.0kb downstream 5000 false Bd1: 7038456-7043455 Brachypodium distachyon
Bradi1g09790 10.0kb upstream 10.0kb upstream 11577 true Bd1: 7043456-7055032 Brachypodium distachyon
Bradi1g09790 10.0kb upstream 10.0kb upstream 10000 false Bd1: 7045033-7055032 Brachypodium distachyon
Bradi1g09790 10.0kb downstream 10.0kb downstream 11577 true Bd1: 7033456-7045032 Brachypodium distachyon
Bradi1g09790 10.0kb downstream 10.0kb downstream 10000 false Bd1: 7033456-7043455 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583609 5269 Grass View MSA
122050730 5273 Angiosperm View MSA
121348092 5274 Embryophyte View MSA
123425572 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.222     High  
cufflinks 26.26     High  
cufflinks 32.603     High  
cufflinks 55.845     High  
cufflinks 27.91     High  
cufflinks 34.616     High  
cufflinks 24.173     High  
cufflinks 48.238     High  
cufflinks 42.93     High  
cufflinks 115.423     High High
cufflinks 54.431     High  
cufflinks 36.931     High  
cufflinks 52.221     High  
cufflinks 91.94     High  
cufflinks 93.794     High  
cufflinks 28.388     High  
cufflinks 63.403     High  
cufflinks 0.535       Low
cufflinks 12.372        
cufflinks 20.882     High  
cufflinks 13.403     High  
cufflinks 34.679     High  
cufflinks 48.414     High  
cufflinks 50.023     High  
cufflinks 44.463     High  
cufflinks 73.195     High  
cufflinks 88.163     High  
cufflinks 59.531     High  
cufflinks 55.619     High  
cufflinks 3.103       Low

0 Strain