Gene : Bradi1g10058 B. distachyon v3.1
Defline:  (1 of 1) PTHR13206 - UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN Genomic Order:  1283
Name:  ? Bradi1g10058 Secondary Identifier:  ? PAC:32793858
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g10058 0.5kb upstream 0.5kb upstream 3956 true Bd1: 7243517-7247472 Brachypodium distachyon
Bradi1g10058 0.5kb upstream 0.5kb upstream 500 false Bd1: 7243517-7244016 Brachypodium distachyon
Bradi1g10058 0.5kb downstream 0.5kb downstream 3956 true Bd1: 7244017-7247972 Brachypodium distachyon
Bradi1g10058 0.5kb downstream 0.5kb downstream 500 false Bd1: 7247473-7247972 Brachypodium distachyon
Bradi1g10058 1.0kb upstream 1.0kb upstream 4456 true Bd1: 7243017-7247472 Brachypodium distachyon
Bradi1g10058 1.0kb upstream 1.0kb upstream 1000 false Bd1: 7243017-7244016 Brachypodium distachyon
Bradi1g10058 1.0kb downstream 1.0kb downstream 4456 true Bd1: 7244017-7248472 Brachypodium distachyon
Bradi1g10058 1.0kb downstream 1.0kb downstream 1000 false Bd1: 7247473-7248472 Brachypodium distachyon
Bradi1g10058 2.0kb upstream 2.0kb upstream 5456 true Bd1: 7242017-7247472 Brachypodium distachyon
Bradi1g10058 2.0kb upstream 2.0kb upstream 2000 false Bd1: 7242017-7244016 Brachypodium distachyon
Bradi1g10058 2.0kb downstream 2.0kb downstream 5456 true Bd1: 7244017-7249472 Brachypodium distachyon
Bradi1g10058 2.0kb downstream 2.0kb downstream 2000 false Bd1: 7247473-7249472 Brachypodium distachyon
Bradi1g10058 5.0kb upstream 5.0kb upstream 8456 true Bd1: 7239017-7247472 Brachypodium distachyon
Bradi1g10058 5.0kb upstream 5.0kb upstream 5000 false Bd1: 7239017-7244016 Brachypodium distachyon
Bradi1g10058 5.0kb downstream 5.0kb downstream 8456 true Bd1: 7244017-7252472 Brachypodium distachyon
Bradi1g10058 5.0kb downstream 5.0kb downstream 5000 false Bd1: 7247473-7252472 Brachypodium distachyon
Bradi1g10058 10.0kb upstream 10.0kb upstream 13456 true Bd1: 7234017-7247472 Brachypodium distachyon
Bradi1g10058 10.0kb upstream 10.0kb upstream 10000 false Bd1: 7234017-7244016 Brachypodium distachyon
Bradi1g10058 10.0kb downstream 10.0kb downstream 13456 true Bd1: 7244017-7257472 Brachypodium distachyon
Bradi1g10058 10.0kb downstream 10.0kb downstream 10000 false Bd1: 7247473-7257472 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040943 5273 Angiosperm View MSA
124579661 5269 Grass View MSA
121344260 5274 Embryophyte View MSA
123423854 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.164        
cufflinks 0.668       High
cufflinks 0.475        
cufflinks 0.806       High
cufflinks 0.197        
cufflinks 0.313        
cufflinks 0.467        
cufflinks 0.165        
cufflinks 0.146        
cufflinks 0.361        
cufflinks 0.103       Low
cufflinks 0.144        
cufflinks 0.055     Low Low
cufflinks 0.087       Low
cufflinks 0.102       Low
cufflinks 0.26        
cufflinks 0.2        
cufflinks 0.499        
cufflinks 0.384        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.443        
cufflinks 0.255        
cufflinks 0.16        
cufflinks 0.262        
cufflinks 0.322        
cufflinks 0.421        
cufflinks 0.129        
cufflinks 0.428        
cufflinks 0.268        
cufflinks 0.332        

0 Strain