Gene : Bradi1g11171 B. distachyon v3.1
Defline:  (1 of 1) PTHR11387:SF17 - CYTOCHROME C OXIDASE SUBUNIT 6B-LIKE-RELATED Genomic Order:  1409
Name:  ? Bradi1g11171 Secondary Identifier:  ? PAC:32798888
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3781 Brachypodium distachyon pathologic  
Bdistachyon PWY-7279 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g11171 0.5kb upstream 0.5kb upstream 2300 true Bd1: 8246766-8249065 Brachypodium distachyon
Bradi1g11171 0.5kb upstream 0.5kb upstream 500 false Bd1: 8248566-8249065 Brachypodium distachyon
Bradi1g11171 0.5kb downstream 0.5kb downstream 2300 true Bd1: 8246266-8248565 Brachypodium distachyon
Bradi1g11171 0.5kb downstream 0.5kb downstream 500 false Bd1: 8246266-8246765 Brachypodium distachyon
Bradi1g11171 1.0kb upstream 1.0kb upstream 2800 true Bd1: 8246766-8249565 Brachypodium distachyon
Bradi1g11171 1.0kb upstream 1.0kb upstream 1000 false Bd1: 8248566-8249565 Brachypodium distachyon
Bradi1g11171 1.0kb downstream 1.0kb downstream 2800 true Bd1: 8245766-8248565 Brachypodium distachyon
Bradi1g11171 1.0kb downstream 1.0kb downstream 1000 false Bd1: 8245766-8246765 Brachypodium distachyon
Bradi1g11171 2.0kb upstream 2.0kb upstream 3800 true Bd1: 8246766-8250565 Brachypodium distachyon
Bradi1g11171 2.0kb upstream 2.0kb upstream 2000 false Bd1: 8248566-8250565 Brachypodium distachyon
Bradi1g11171 2.0kb downstream 2.0kb downstream 3800 true Bd1: 8244766-8248565 Brachypodium distachyon
Bradi1g11171 2.0kb downstream 2.0kb downstream 2000 false Bd1: 8244766-8246765 Brachypodium distachyon
Bradi1g11171 5.0kb upstream 5.0kb upstream 6800 true Bd1: 8246766-8253565 Brachypodium distachyon
Bradi1g11171 5.0kb upstream 5.0kb upstream 5000 false Bd1: 8248566-8253565 Brachypodium distachyon
Bradi1g11171 5.0kb downstream 5.0kb downstream 6800 true Bd1: 8241766-8248565 Brachypodium distachyon
Bradi1g11171 5.0kb downstream 5.0kb downstream 5000 false Bd1: 8241766-8246765 Brachypodium distachyon
Bradi1g11171 10.0kb upstream 10.0kb upstream 11800 true Bd1: 8246766-8258565 Brachypodium distachyon
Bradi1g11171 10.0kb upstream 10.0kb upstream 10000 false Bd1: 8248566-8258565 Brachypodium distachyon
Bradi1g11171 10.0kb downstream 10.0kb downstream 11800 true Bd1: 8236766-8248565 Brachypodium distachyon
Bradi1g11171 10.0kb downstream 10.0kb downstream 10000 false Bd1: 8236766-8246765 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590992 5269 Grass View MSA
122050829 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.918        
cufflinks 1.447        
cufflinks 2.633        
cufflinks 2.384        
cufflinks 1.77        
cufflinks 2.222        
cufflinks 1.735        
cufflinks 1.692        
cufflinks 1.483        
cufflinks 6.64       High
cufflinks 5.676       High
cufflinks 1.433        
cufflinks 2.854        
cufflinks 3.717        
cufflinks 2.867        
cufflinks 2.163        
cufflinks 3.121        
cufflinks 0.874       Low
cufflinks 6.405       High
cufflinks 16.82     High High
cufflinks 1.465        
cufflinks 2.7        
cufflinks 1.683        
cufflinks 1.435        
cufflinks 1.768        
cufflinks 5.662       High
cufflinks 3.599        
cufflinks 4.781        
cufflinks 4.069        
cufflinks 1.434        

0 Strain