Gene : Bradi1g07490 B. distachyon v3.1
Defline:  (1 of 1) PTHR12970 - TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 CLAST3 Genomic Order:  966
Name:  ? Bradi1g07490 Secondary Identifier:  ? PAC:32795369
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g07490 0.5kb upstream 0.5kb upstream 4264 true Bd1: 5241852-5246115 Brachypodium distachyon
Bradi1g07490 0.5kb upstream 0.5kb upstream 500 false Bd1: 5245616-5246115 Brachypodium distachyon
Bradi1g07490 0.5kb downstream 0.5kb downstream 4264 true Bd1: 5241352-5245615 Brachypodium distachyon
Bradi1g07490 0.5kb downstream 0.5kb downstream 500 false Bd1: 5241352-5241851 Brachypodium distachyon
Bradi1g07490 1.0kb upstream 1.0kb upstream 4764 true Bd1: 5241852-5246615 Brachypodium distachyon
Bradi1g07490 1.0kb upstream 1.0kb upstream 1000 false Bd1: 5245616-5246615 Brachypodium distachyon
Bradi1g07490 1.0kb downstream 1.0kb downstream 4764 true Bd1: 5240852-5245615 Brachypodium distachyon
Bradi1g07490 1.0kb downstream 1.0kb downstream 1000 false Bd1: 5240852-5241851 Brachypodium distachyon
Bradi1g07490 2.0kb upstream 2.0kb upstream 5764 true Bd1: 5241852-5247615 Brachypodium distachyon
Bradi1g07490 2.0kb upstream 2.0kb upstream 2000 false Bd1: 5245616-5247615 Brachypodium distachyon
Bradi1g07490 2.0kb downstream 2.0kb downstream 5764 true Bd1: 5239852-5245615 Brachypodium distachyon
Bradi1g07490 2.0kb downstream 2.0kb downstream 2000 false Bd1: 5239852-5241851 Brachypodium distachyon
Bradi1g07490 5.0kb upstream 5.0kb upstream 8764 true Bd1: 5241852-5250615 Brachypodium distachyon
Bradi1g07490 5.0kb upstream 5.0kb upstream 5000 false Bd1: 5245616-5250615 Brachypodium distachyon
Bradi1g07490 5.0kb downstream 5.0kb downstream 8764 true Bd1: 5236852-5245615 Brachypodium distachyon
Bradi1g07490 5.0kb downstream 5.0kb downstream 5000 false Bd1: 5236852-5241851 Brachypodium distachyon
Bradi1g07490 10.0kb upstream 10.0kb upstream 13764 true Bd1: 5241852-5255615 Brachypodium distachyon
Bradi1g07490 10.0kb upstream 10.0kb upstream 10000 false Bd1: 5245616-5255615 Brachypodium distachyon
Bradi1g07490 10.0kb downstream 10.0kb downstream 13764 true Bd1: 5231852-5245615 Brachypodium distachyon
Bradi1g07490 10.0kb downstream 10.0kb downstream 10000 false Bd1: 5231852-5241851 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583641 5269 Grass View MSA
122043036 5273 Angiosperm View MSA
121344362 5274 Embryophyte View MSA
123425402 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.681        
cufflinks 2.224       High
cufflinks 1.643        
cufflinks 2.253       High
cufflinks 1.147        
cufflinks 1.557        
cufflinks 1.812        
cufflinks 1.406        
cufflinks 1.461        
cufflinks 1.343        
cufflinks 0.895       Low
cufflinks 1.146        
cufflinks 0.809       Low
cufflinks 0.88       Low
cufflinks 0.921       Low
cufflinks 1.703        
cufflinks 1.708        
cufflinks 2.738       High
cufflinks 2.169       High
cufflinks 1.287        
cufflinks 1.881        
cufflinks 1.471        
cufflinks 1.374        
cufflinks 1.458        
cufflinks 1.883        
cufflinks 1.652        
cufflinks 1.135        
cufflinks 1.58        
cufflinks 1.614        
cufflinks 1.773        

0 Strain