Gene : Bradi1g13960 B. distachyon v3.1
Defline:  (1 of 1) PTHR22942//PTHR22942:SF37 - RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER // DNA REPAIR PROTEIN RECA HOMOLOG 1, CHLOROPLASTIC Genomic Order:  1764
Name:  ? Bradi1g13960 Secondary Identifier:  ? PAC:32795766
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g13960 0.5kb upstream 0.5kb upstream 8246 true Bd1: 10814481-10822726 Brachypodium distachyon
Bradi1g13960 0.5kb upstream 0.5kb upstream 500 false Bd1: 10822227-10822726 Brachypodium distachyon
Bradi1g13960 0.5kb downstream 0.5kb downstream 8246 true Bd1: 10813981-10822226 Brachypodium distachyon
Bradi1g13960 0.5kb downstream 0.5kb downstream 500 false Bd1: 10813981-10814480 Brachypodium distachyon
Bradi1g13960 1.0kb upstream 1.0kb upstream 8746 true Bd1: 10814481-10823226 Brachypodium distachyon
Bradi1g13960 1.0kb upstream 1.0kb upstream 1000 false Bd1: 10822227-10823226 Brachypodium distachyon
Bradi1g13960 1.0kb downstream 1.0kb downstream 8746 true Bd1: 10813481-10822226 Brachypodium distachyon
Bradi1g13960 1.0kb downstream 1.0kb downstream 1000 false Bd1: 10813481-10814480 Brachypodium distachyon
Bradi1g13960 2.0kb upstream 2.0kb upstream 9746 true Bd1: 10814481-10824226 Brachypodium distachyon
Bradi1g13960 2.0kb upstream 2.0kb upstream 2000 false Bd1: 10822227-10824226 Brachypodium distachyon
Bradi1g13960 2.0kb downstream 2.0kb downstream 9746 true Bd1: 10812481-10822226 Brachypodium distachyon
Bradi1g13960 2.0kb downstream 2.0kb downstream 2000 false Bd1: 10812481-10814480 Brachypodium distachyon
Bradi1g13960 5.0kb upstream 5.0kb upstream 12746 true Bd1: 10814481-10827226 Brachypodium distachyon
Bradi1g13960 5.0kb upstream 5.0kb upstream 5000 false Bd1: 10822227-10827226 Brachypodium distachyon
Bradi1g13960 5.0kb downstream 5.0kb downstream 12746 true Bd1: 10809481-10822226 Brachypodium distachyon
Bradi1g13960 5.0kb downstream 5.0kb downstream 5000 false Bd1: 10809481-10814480 Brachypodium distachyon
Bradi1g13960 10.0kb upstream 10.0kb upstream 17746 true Bd1: 10814481-10832226 Brachypodium distachyon
Bradi1g13960 10.0kb upstream 10.0kb upstream 10000 false Bd1: 10822227-10832226 Brachypodium distachyon
Bradi1g13960 10.0kb downstream 10.0kb downstream 17746 true Bd1: 10804481-10822226 Brachypodium distachyon
Bradi1g13960 10.0kb downstream 10.0kb downstream 10000 false Bd1: 10804481-10814480 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575595 5269 Grass View MSA
122042524 5273 Angiosperm View MSA
121345028 5274 Embryophyte View MSA
123425276 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.592        
cufflinks 0.84       High
cufflinks 0.682        
cufflinks 0.822       High
cufflinks 0.43        
cufflinks 0.606        
cufflinks 0.621        
cufflinks 0.452        
cufflinks 0.554        
cufflinks 0.518        
cufflinks 0.446        
cufflinks 0.469        
cufflinks 0.179       Low
cufflinks 0.338       Low
cufflinks 0.35        
cufflinks 0.732       High
cufflinks 0.523        
cufflinks 0.444        
cufflinks 0.46        
cufflinks 0.418        
cufflinks 0.338       Low
cufflinks 0.487        
cufflinks 0.399        
cufflinks 0.468        
cufflinks 0.646        
cufflinks 0.664        
cufflinks 0.188       Low
cufflinks 0.483        
cufflinks 0.462        
cufflinks 0.533        

0 Strain