Gene : Bradi1g15840 B. distachyon v3.1
Defline:  (1 of 1) PF06351 - Allene oxide cyclase (Allene_ox_cyc) Genomic Order:  2022
Name:  ? Bradi1g15840 Secondary Identifier:  ? PAC:32802669
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-735 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g15840 0.5kb upstream 0.5kb upstream 1822 true Bd1: 12796074-12797895 Brachypodium distachyon
Bradi1g15840 0.5kb upstream 0.5kb upstream 500 false Bd1: 12797396-12797895 Brachypodium distachyon
Bradi1g15840 0.5kb downstream 0.5kb downstream 1822 true Bd1: 12795574-12797395 Brachypodium distachyon
Bradi1g15840 0.5kb downstream 0.5kb downstream 500 false Bd1: 12795574-12796073 Brachypodium distachyon
Bradi1g15840 1.0kb upstream 1.0kb upstream 2322 true Bd1: 12796074-12798395 Brachypodium distachyon
Bradi1g15840 1.0kb upstream 1.0kb upstream 1000 false Bd1: 12797396-12798395 Brachypodium distachyon
Bradi1g15840 1.0kb downstream 1.0kb downstream 2322 true Bd1: 12795074-12797395 Brachypodium distachyon
Bradi1g15840 1.0kb downstream 1.0kb downstream 1000 false Bd1: 12795074-12796073 Brachypodium distachyon
Bradi1g15840 2.0kb upstream 2.0kb upstream 3322 true Bd1: 12796074-12799395 Brachypodium distachyon
Bradi1g15840 2.0kb upstream 2.0kb upstream 2000 false Bd1: 12797396-12799395 Brachypodium distachyon
Bradi1g15840 2.0kb downstream 2.0kb downstream 3322 true Bd1: 12794074-12797395 Brachypodium distachyon
Bradi1g15840 2.0kb downstream 2.0kb downstream 2000 false Bd1: 12794074-12796073 Brachypodium distachyon
Bradi1g15840 5.0kb upstream 5.0kb upstream 6322 true Bd1: 12796074-12802395 Brachypodium distachyon
Bradi1g15840 5.0kb upstream 5.0kb upstream 5000 false Bd1: 12797396-12802395 Brachypodium distachyon
Bradi1g15840 5.0kb downstream 5.0kb downstream 6322 true Bd1: 12791074-12797395 Brachypodium distachyon
Bradi1g15840 5.0kb downstream 5.0kb downstream 5000 false Bd1: 12791074-12796073 Brachypodium distachyon
Bradi1g15840 10.0kb upstream 10.0kb upstream 11322 true Bd1: 12796074-12807395 Brachypodium distachyon
Bradi1g15840 10.0kb upstream 10.0kb upstream 10000 false Bd1: 12797396-12807395 Brachypodium distachyon
Bradi1g15840 10.0kb downstream 10.0kb downstream 11322 true Bd1: 12786074-12797395 Brachypodium distachyon
Bradi1g15840 10.0kb downstream 10.0kb downstream 10000 false Bd1: 12786074-12796073 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573645 5269 Grass View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.879     High  
cufflinks 30.386     High  
cufflinks 37.386     High  
cufflinks 35.525     High  
cufflinks 163.387     High High
cufflinks 30.002     High  
cufflinks 39.882     High  
cufflinks 46.108     High  
cufflinks 38.682     High  
cufflinks 48.509     High  
cufflinks 39.196     High  
cufflinks 26.492     High Low
cufflinks 35.16     High  
cufflinks 28.387     High  
cufflinks 43.516     High  
cufflinks 32.678     High  
cufflinks 49.453     High  
cufflinks 47.819     High  
cufflinks 82.956     High High
cufflinks 38.21     High  
cufflinks 89.487     High High
cufflinks 37.605     High  
cufflinks 54.22     High  
cufflinks 43.257     High  
cufflinks 41.012     High  
cufflinks 36.024     High  
cufflinks 27.294     High Low
cufflinks 42.227     High  
cufflinks 34.156     High  
cufflinks 79.268     High High

0 Strain