Gene : Bradi1g11770 B. distachyon v3.1
Defline:  (1 of 2) PTHR13848:SF5 - PROTEIN YIPPEE-LIKE Genomic Order:  1478
Name:  ? Bradi1g11770 Secondary Identifier:  ? PAC:32792755
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g11770 0.5kb upstream 0.5kb upstream 3548 true Bd1: 8754906-8758453 Brachypodium distachyon
Bradi1g11770 0.5kb upstream 0.5kb upstream 500 false Bd1: 8757954-8758453 Brachypodium distachyon
Bradi1g11770 0.5kb downstream 0.5kb downstream 3548 true Bd1: 8754406-8757953 Brachypodium distachyon
Bradi1g11770 0.5kb downstream 0.5kb downstream 500 false Bd1: 8754406-8754905 Brachypodium distachyon
Bradi1g11770 1.0kb upstream 1.0kb upstream 4048 true Bd1: 8754906-8758953 Brachypodium distachyon
Bradi1g11770 1.0kb upstream 1.0kb upstream 1000 false Bd1: 8757954-8758953 Brachypodium distachyon
Bradi1g11770 1.0kb downstream 1.0kb downstream 4048 true Bd1: 8753906-8757953 Brachypodium distachyon
Bradi1g11770 1.0kb downstream 1.0kb downstream 1000 false Bd1: 8753906-8754905 Brachypodium distachyon
Bradi1g11770 2.0kb upstream 2.0kb upstream 5048 true Bd1: 8754906-8759953 Brachypodium distachyon
Bradi1g11770 2.0kb upstream 2.0kb upstream 2000 false Bd1: 8757954-8759953 Brachypodium distachyon
Bradi1g11770 2.0kb downstream 2.0kb downstream 5048 true Bd1: 8752906-8757953 Brachypodium distachyon
Bradi1g11770 2.0kb downstream 2.0kb downstream 2000 false Bd1: 8752906-8754905 Brachypodium distachyon
Bradi1g11770 5.0kb upstream 5.0kb upstream 8048 true Bd1: 8754906-8762953 Brachypodium distachyon
Bradi1g11770 5.0kb upstream 5.0kb upstream 5000 false Bd1: 8757954-8762953 Brachypodium distachyon
Bradi1g11770 5.0kb downstream 5.0kb downstream 8048 true Bd1: 8749906-8757953 Brachypodium distachyon
Bradi1g11770 5.0kb downstream 5.0kb downstream 5000 false Bd1: 8749906-8754905 Brachypodium distachyon
Bradi1g11770 10.0kb upstream 10.0kb upstream 13048 true Bd1: 8754906-8767953 Brachypodium distachyon
Bradi1g11770 10.0kb upstream 10.0kb upstream 10000 false Bd1: 8757954-8767953 Brachypodium distachyon
Bradi1g11770 10.0kb downstream 10.0kb downstream 13048 true Bd1: 8744906-8757953 Brachypodium distachyon
Bradi1g11770 10.0kb downstream 10.0kb downstream 10000 false Bd1: 8744906-8754905 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588861 5269 Grass View MSA
122047992 5273 Angiosperm View MSA
123428914 5275 Viridiplantae View MSA
121350900 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.809       Low
cufflinks 12.825     High  
cufflinks 22.342     High High
cufflinks 17.376     High  
cufflinks 22.012     High High
cufflinks 10.562     High  
cufflinks 10.999     High  
cufflinks 11.13     High  
cufflinks 10.985     High  
cufflinks 23.995     High High
cufflinks 14.39     High  
cufflinks 11.891     High  
cufflinks 13.035     High  
cufflinks 13.086     High  
cufflinks 11.856     High  
cufflinks 10.22     High  
cufflinks 12.062     High  
cufflinks 4.044       Low
cufflinks 14.172     High  
cufflinks 13.266     High  
cufflinks 13.86     High  
cufflinks 16.78     High  
cufflinks 11.48     High  
cufflinks 10.561     High  
cufflinks 11.643     High  
cufflinks 27.647     High High
cufflinks 13.855     High  
cufflinks 26.405     High High
cufflinks 22.462     High High
cufflinks 11.84     High  

0 Strain