Gene : Bradi1g12080 B. distachyon v3.1
Defline:  (1 of 2) PTHR12418:SF33 - 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 Genomic Order:  1520
Name:  ? Bradi1g12080 Secondary Identifier:  ? PAC:32802271
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5837 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g12080 0.5kb upstream 0.5kb upstream 2121 true Bd1: 8976759-8978879 Brachypodium distachyon
Bradi1g12080 0.5kb upstream 0.5kb upstream 500 false Bd1: 8976759-8977258 Brachypodium distachyon
Bradi1g12080 0.5kb downstream 0.5kb downstream 2121 true Bd1: 8977259-8979379 Brachypodium distachyon
Bradi1g12080 0.5kb downstream 0.5kb downstream 500 false Bd1: 8978880-8979379 Brachypodium distachyon
Bradi1g12080 1.0kb upstream 1.0kb upstream 2621 true Bd1: 8976259-8978879 Brachypodium distachyon
Bradi1g12080 1.0kb upstream 1.0kb upstream 1000 false Bd1: 8976259-8977258 Brachypodium distachyon
Bradi1g12080 1.0kb downstream 1.0kb downstream 2621 true Bd1: 8977259-8979879 Brachypodium distachyon
Bradi1g12080 1.0kb downstream 1.0kb downstream 1000 false Bd1: 8978880-8979879 Brachypodium distachyon
Bradi1g12080 2.0kb upstream 2.0kb upstream 3621 true Bd1: 8975259-8978879 Brachypodium distachyon
Bradi1g12080 2.0kb upstream 2.0kb upstream 2000 false Bd1: 8975259-8977258 Brachypodium distachyon
Bradi1g12080 2.0kb downstream 2.0kb downstream 3621 true Bd1: 8977259-8980879 Brachypodium distachyon
Bradi1g12080 2.0kb downstream 2.0kb downstream 2000 false Bd1: 8978880-8980879 Brachypodium distachyon
Bradi1g12080 5.0kb upstream 5.0kb upstream 6621 true Bd1: 8972259-8978879 Brachypodium distachyon
Bradi1g12080 5.0kb upstream 5.0kb upstream 5000 false Bd1: 8972259-8977258 Brachypodium distachyon
Bradi1g12080 5.0kb downstream 5.0kb downstream 6621 true Bd1: 8977259-8983879 Brachypodium distachyon
Bradi1g12080 5.0kb downstream 5.0kb downstream 5000 false Bd1: 8978880-8983879 Brachypodium distachyon
Bradi1g12080 10.0kb upstream 10.0kb upstream 11621 true Bd1: 8967259-8978879 Brachypodium distachyon
Bradi1g12080 10.0kb upstream 10.0kb upstream 10000 false Bd1: 8967259-8977258 Brachypodium distachyon
Bradi1g12080 10.0kb downstream 10.0kb downstream 11621 true Bd1: 8977259-8988879 Brachypodium distachyon
Bradi1g12080 10.0kb downstream 10.0kb downstream 10000 false Bd1: 8978880-8988879 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584994 5269 Grass View MSA
122042191 5273 Angiosperm View MSA
121348407 5274 Embryophyte View MSA
123380851 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.085        
cufflinks 0.854       Low
cufflinks 1.289        
cufflinks 0.825       Low
cufflinks 7.295       High
cufflinks 1.184        
cufflinks 1.53        
cufflinks 1.099        
cufflinks 1.165        
cufflinks 3.798        
cufflinks 2.843        
cufflinks 1.318        
cufflinks 1.791        
cufflinks 2.204        
cufflinks 1.191        
cufflinks 1.151        
cufflinks 3.063        
cufflinks 6.277       High
cufflinks 18.451     High High
cufflinks 25.786     High High
cufflinks 1.627        
cufflinks 1.089        
cufflinks 1.114        
cufflinks 1.022        
cufflinks 1.263        
cufflinks 2.366        
cufflinks 2.589        
cufflinks 3.361        
cufflinks 3.014        
cufflinks 0.884       Low

0 Strain