Gene : Bradi1g12040 B. distachyon v3.1
Defline:  (1 of 2) PTHR19328//PTHR19328:SF36 - PQQ OXIDOREDUCTASE-RELATED Genomic Order:  1511
Name:  ? Bradi1g12040 Secondary Identifier:  ? PAC:32798595
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLUCOSE1PMETAB-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g12040 0.5kb upstream 0.5kb upstream 8242 true Bd1: 8937206-8945447 Brachypodium distachyon
Bradi1g12040 0.5kb upstream 0.5kb upstream 500 false Bd1: 8944948-8945447 Brachypodium distachyon
Bradi1g12040 0.5kb downstream 0.5kb downstream 8242 true Bd1: 8936706-8944947 Brachypodium distachyon
Bradi1g12040 0.5kb downstream 0.5kb downstream 500 false Bd1: 8936706-8937205 Brachypodium distachyon
Bradi1g12040 1.0kb upstream 1.0kb upstream 8742 true Bd1: 8937206-8945947 Brachypodium distachyon
Bradi1g12040 1.0kb upstream 1.0kb upstream 1000 false Bd1: 8944948-8945947 Brachypodium distachyon
Bradi1g12040 1.0kb downstream 1.0kb downstream 8742 true Bd1: 8936206-8944947 Brachypodium distachyon
Bradi1g12040 1.0kb downstream 1.0kb downstream 1000 false Bd1: 8936206-8937205 Brachypodium distachyon
Bradi1g12040 2.0kb upstream 2.0kb upstream 9742 true Bd1: 8937206-8946947 Brachypodium distachyon
Bradi1g12040 2.0kb upstream 2.0kb upstream 2000 false Bd1: 8944948-8946947 Brachypodium distachyon
Bradi1g12040 2.0kb downstream 2.0kb downstream 9742 true Bd1: 8935206-8944947 Brachypodium distachyon
Bradi1g12040 2.0kb downstream 2.0kb downstream 2000 false Bd1: 8935206-8937205 Brachypodium distachyon
Bradi1g12040 5.0kb upstream 5.0kb upstream 12742 true Bd1: 8937206-8949947 Brachypodium distachyon
Bradi1g12040 5.0kb upstream 5.0kb upstream 5000 false Bd1: 8944948-8949947 Brachypodium distachyon
Bradi1g12040 5.0kb downstream 5.0kb downstream 12742 true Bd1: 8932206-8944947 Brachypodium distachyon
Bradi1g12040 5.0kb downstream 5.0kb downstream 5000 false Bd1: 8932206-8937205 Brachypodium distachyon
Bradi1g12040 10.0kb upstream 10.0kb upstream 17742 true Bd1: 8937206-8954947 Brachypodium distachyon
Bradi1g12040 10.0kb upstream 10.0kb upstream 10000 false Bd1: 8944948-8954947 Brachypodium distachyon
Bradi1g12040 10.0kb downstream 10.0kb downstream 17742 true Bd1: 8927206-8944947 Brachypodium distachyon
Bradi1g12040 10.0kb downstream 10.0kb downstream 10000 false Bd1: 8927206-8937205 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584643 5269 Grass View MSA
122045052 5273 Angiosperm View MSA
121344764 5274 Embryophyte View MSA
123380098 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.249        
cufflinks 0.661        
cufflinks 0.496        
cufflinks 0.496        
cufflinks 0.224        
cufflinks 0.567        
cufflinks 0.615        
cufflinks 0.242        
cufflinks 0.368        
cufflinks 0.261        
cufflinks 0.499        
cufflinks 0.429        
cufflinks 0.421        
cufflinks 0.288        
cufflinks 0.195       Low
cufflinks 0.395        
cufflinks 0.297        
cufflinks 1.909       High
cufflinks 0.503        
cufflinks 0.376        
cufflinks 0.184       Low
cufflinks 0.305        
cufflinks 0.224        
cufflinks 0.314        
cufflinks 0.442        
cufflinks 0.403        
cufflinks 0.246        
cufflinks 0.396        
cufflinks 0.286        
cufflinks 0.426        

0 Strain