Gene : Bradi1g12340 B. distachyon v3.1
Defline:  (1 of 1) K10588 - ubiquitin-protein ligase E3 B (UBE3B) Genomic Order:  1555
Name:  ? Bradi1g12340 Secondary Identifier:  ? PAC:32795387
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g12340 0.5kb upstream 0.5kb upstream 11974 true Bd1: 9242789-9254762 Brachypodium distachyon
Bradi1g12340 0.5kb upstream 0.5kb upstream 500 false Bd1: 9242789-9243288 Brachypodium distachyon
Bradi1g12340 0.5kb downstream 0.5kb downstream 11974 true Bd1: 9243289-9255262 Brachypodium distachyon
Bradi1g12340 0.5kb downstream 0.5kb downstream 500 false Bd1: 9254763-9255262 Brachypodium distachyon
Bradi1g12340 1.0kb upstream 1.0kb upstream 12474 true Bd1: 9242289-9254762 Brachypodium distachyon
Bradi1g12340 1.0kb upstream 1.0kb upstream 1000 false Bd1: 9242289-9243288 Brachypodium distachyon
Bradi1g12340 1.0kb downstream 1.0kb downstream 12474 true Bd1: 9243289-9255762 Brachypodium distachyon
Bradi1g12340 1.0kb downstream 1.0kb downstream 1000 false Bd1: 9254763-9255762 Brachypodium distachyon
Bradi1g12340 2.0kb upstream 2.0kb upstream 13474 true Bd1: 9241289-9254762 Brachypodium distachyon
Bradi1g12340 2.0kb upstream 2.0kb upstream 2000 false Bd1: 9241289-9243288 Brachypodium distachyon
Bradi1g12340 2.0kb downstream 2.0kb downstream 13474 true Bd1: 9243289-9256762 Brachypodium distachyon
Bradi1g12340 2.0kb downstream 2.0kb downstream 2000 false Bd1: 9254763-9256762 Brachypodium distachyon
Bradi1g12340 5.0kb upstream 5.0kb upstream 16474 true Bd1: 9238289-9254762 Brachypodium distachyon
Bradi1g12340 5.0kb upstream 5.0kb upstream 5000 false Bd1: 9238289-9243288 Brachypodium distachyon
Bradi1g12340 5.0kb downstream 5.0kb downstream 16474 true Bd1: 9243289-9259762 Brachypodium distachyon
Bradi1g12340 5.0kb downstream 5.0kb downstream 5000 false Bd1: 9254763-9259762 Brachypodium distachyon
Bradi1g12340 10.0kb upstream 10.0kb upstream 21474 true Bd1: 9233289-9254762 Brachypodium distachyon
Bradi1g12340 10.0kb upstream 10.0kb upstream 10000 false Bd1: 9233289-9243288 Brachypodium distachyon
Bradi1g12340 10.0kb downstream 10.0kb downstream 21474 true Bd1: 9243289-9264762 Brachypodium distachyon
Bradi1g12340 10.0kb downstream 10.0kb downstream 10000 false Bd1: 9254763-9264762 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581540 5269 Grass View MSA
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.124        
cufflinks 3.121        
cufflinks 3.409        
cufflinks 2.459        
cufflinks 1.1       Low
cufflinks 2.891        
cufflinks 2.734        
cufflinks 2.496        
cufflinks 2.704        
cufflinks 2.408        
cufflinks 3.381        
cufflinks 2.773        
cufflinks 2.757        
cufflinks 2.432        
cufflinks 1.903        
cufflinks 3.098        
cufflinks 1.741        
cufflinks 4.819       High
cufflinks 3.064        
cufflinks 1.238       Low
cufflinks 2.142        
cufflinks 3.696       High
cufflinks 2.508        
cufflinks 2.597        
cufflinks 2.453        
cufflinks 3.441        
cufflinks 3.466        
cufflinks 3.204        
cufflinks 3.282        
cufflinks 3.075        

0 Strain