Gene : Bradi1g13220 B. distachyon v3.1
Defline:  (1 of 3) K03120 - transcription initiation factor TFIID TATA-box-binding protein (TBP, tbp) Genomic Order:  1666
Name:  ? Bradi1g13220 Secondary Identifier:  ? PAC:32798799
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g13220 0.5kb upstream 0.5kb upstream 4506 true Bd1: 10018897-10023402 Brachypodium distachyon
Bradi1g13220 0.5kb upstream 0.5kb upstream 500 false Bd1: 10022903-10023402 Brachypodium distachyon
Bradi1g13220 0.5kb downstream 0.5kb downstream 4506 true Bd1: 10018397-10022902 Brachypodium distachyon
Bradi1g13220 0.5kb downstream 0.5kb downstream 500 false Bd1: 10018397-10018896 Brachypodium distachyon
Bradi1g13220 1.0kb upstream 1.0kb upstream 5006 true Bd1: 10018897-10023902 Brachypodium distachyon
Bradi1g13220 1.0kb upstream 1.0kb upstream 1000 false Bd1: 10022903-10023902 Brachypodium distachyon
Bradi1g13220 1.0kb downstream 1.0kb downstream 5006 true Bd1: 10017897-10022902 Brachypodium distachyon
Bradi1g13220 1.0kb downstream 1.0kb downstream 1000 false Bd1: 10017897-10018896 Brachypodium distachyon
Bradi1g13220 2.0kb upstream 2.0kb upstream 6006 true Bd1: 10018897-10024902 Brachypodium distachyon
Bradi1g13220 2.0kb upstream 2.0kb upstream 2000 false Bd1: 10022903-10024902 Brachypodium distachyon
Bradi1g13220 2.0kb downstream 2.0kb downstream 6006 true Bd1: 10016897-10022902 Brachypodium distachyon
Bradi1g13220 2.0kb downstream 2.0kb downstream 2000 false Bd1: 10016897-10018896 Brachypodium distachyon
Bradi1g13220 5.0kb upstream 5.0kb upstream 9006 true Bd1: 10018897-10027902 Brachypodium distachyon
Bradi1g13220 5.0kb upstream 5.0kb upstream 5000 false Bd1: 10022903-10027902 Brachypodium distachyon
Bradi1g13220 5.0kb downstream 5.0kb downstream 9006 true Bd1: 10013897-10022902 Brachypodium distachyon
Bradi1g13220 5.0kb downstream 5.0kb downstream 5000 false Bd1: 10013897-10018896 Brachypodium distachyon
Bradi1g13220 10.0kb upstream 10.0kb upstream 14006 true Bd1: 10018897-10032902 Brachypodium distachyon
Bradi1g13220 10.0kb upstream 10.0kb upstream 10000 false Bd1: 10022903-10032902 Brachypodium distachyon
Bradi1g13220 10.0kb downstream 10.0kb downstream 14006 true Bd1: 10008897-10022902 Brachypodium distachyon
Bradi1g13220 10.0kb downstream 10.0kb downstream 10000 false Bd1: 10008897-10018896 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569114 5269 Grass View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.916       Low
cufflinks 3.451        
cufflinks 3.604        
cufflinks 3.734        
cufflinks 7.911       High
cufflinks 3.256        
cufflinks 3.253        
cufflinks 3.504        
cufflinks 3.396        
cufflinks 4.474        
cufflinks 3.783        
cufflinks 3.633        
cufflinks 3.138        
cufflinks 3.359        
cufflinks 3.393        
cufflinks 2.959       Low
cufflinks 4.017        
cufflinks 3.825        
cufflinks 2.971       Low
cufflinks 7.0       High
cufflinks 4.982        
cufflinks 3.71        
cufflinks 3.309        
cufflinks 3.328        
cufflinks 3.408        
cufflinks 3.959        
cufflinks 3.518        
cufflinks 3.681        
cufflinks 3.585        
cufflinks 4.213        

0 Strain