Gene : Bradi1g20170 B. distachyon v3.1
Defline:  (1 of 2) PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Genomic Order:  2522
Name:  ? Bradi1g20170 Secondary Identifier:  ? PAC:32798280
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g20170 0.5kb upstream 0.5kb upstream 7611 true Bd1: 16150105-16157715 Brachypodium distachyon
Bradi1g20170 0.5kb upstream 0.5kb upstream 500 false Bd1: 16157216-16157715 Brachypodium distachyon
Bradi1g20170 0.5kb downstream 0.5kb downstream 7611 true Bd1: 16149605-16157215 Brachypodium distachyon
Bradi1g20170 0.5kb downstream 0.5kb downstream 500 false Bd1: 16149605-16150104 Brachypodium distachyon
Bradi1g20170 1.0kb upstream 1.0kb upstream 8111 true Bd1: 16150105-16158215 Brachypodium distachyon
Bradi1g20170 1.0kb upstream 1.0kb upstream 1000 false Bd1: 16157216-16158215 Brachypodium distachyon
Bradi1g20170 1.0kb downstream 1.0kb downstream 8111 true Bd1: 16149105-16157215 Brachypodium distachyon
Bradi1g20170 1.0kb downstream 1.0kb downstream 1000 false Bd1: 16149105-16150104 Brachypodium distachyon
Bradi1g20170 2.0kb upstream 2.0kb upstream 9111 true Bd1: 16150105-16159215 Brachypodium distachyon
Bradi1g20170 2.0kb upstream 2.0kb upstream 2000 false Bd1: 16157216-16159215 Brachypodium distachyon
Bradi1g20170 2.0kb downstream 2.0kb downstream 9111 true Bd1: 16148105-16157215 Brachypodium distachyon
Bradi1g20170 2.0kb downstream 2.0kb downstream 2000 false Bd1: 16148105-16150104 Brachypodium distachyon
Bradi1g20170 5.0kb upstream 5.0kb upstream 12111 true Bd1: 16150105-16162215 Brachypodium distachyon
Bradi1g20170 5.0kb upstream 5.0kb upstream 5000 false Bd1: 16157216-16162215 Brachypodium distachyon
Bradi1g20170 5.0kb downstream 5.0kb downstream 12111 true Bd1: 16145105-16157215 Brachypodium distachyon
Bradi1g20170 5.0kb downstream 5.0kb downstream 5000 false Bd1: 16145105-16150104 Brachypodium distachyon
Bradi1g20170 10.0kb upstream 10.0kb upstream 17111 true Bd1: 16150105-16167215 Brachypodium distachyon
Bradi1g20170 10.0kb upstream 10.0kb upstream 10000 false Bd1: 16157216-16167215 Brachypodium distachyon
Bradi1g20170 10.0kb downstream 10.0kb downstream 17111 true Bd1: 16140105-16157215 Brachypodium distachyon
Bradi1g20170 10.0kb downstream 10.0kb downstream 10000 false Bd1: 16140105-16150104 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571752 5269 Grass View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.106        
cufflinks 4.322        
cufflinks 4.325        
cufflinks 3.277        
cufflinks 3.109        
cufflinks 4.003        
cufflinks 3.828        
cufflinks 4.205        
cufflinks 3.818        
cufflinks 2.396       Low
cufflinks 3.641        
cufflinks 5.037       High
cufflinks 2.915        
cufflinks 2.368       Low
cufflinks 3.478        
cufflinks 4.351        
cufflinks 2.76        
cufflinks 7.087       High
cufflinks 4.033        
cufflinks 1.986       Low
cufflinks 4.795        
cufflinks 4.272        
cufflinks 4.323        
cufflinks 3.524        
cufflinks 2.951        
cufflinks 3.318        
cufflinks 3.491        
cufflinks 3.524        
cufflinks 3.398        
cufflinks 5.807       High

0 Strain