Gene : Bradi1g16075 B. distachyon v3.1
Defline:  (1 of 1) PTHR23327:SF9 - ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN Genomic Order:  2048
Name:  ? Bradi1g16075 Secondary Identifier:  ? PAC:32796421
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g16075 0.5kb upstream 0.5kb upstream 10897 true Bd1: 12993160-13004056 Brachypodium distachyon
Bradi1g16075 0.5kb upstream 0.5kb upstream 500 false Bd1: 12993160-12993659 Brachypodium distachyon
Bradi1g16075 0.5kb downstream 0.5kb downstream 10897 true Bd1: 12993660-13004556 Brachypodium distachyon
Bradi1g16075 0.5kb downstream 0.5kb downstream 500 false Bd1: 13004057-13004556 Brachypodium distachyon
Bradi1g16075 1.0kb upstream 1.0kb upstream 11397 true Bd1: 12992660-13004056 Brachypodium distachyon
Bradi1g16075 1.0kb upstream 1.0kb upstream 1000 false Bd1: 12992660-12993659 Brachypodium distachyon
Bradi1g16075 1.0kb downstream 1.0kb downstream 11397 true Bd1: 12993660-13005056 Brachypodium distachyon
Bradi1g16075 1.0kb downstream 1.0kb downstream 1000 false Bd1: 13004057-13005056 Brachypodium distachyon
Bradi1g16075 2.0kb upstream 2.0kb upstream 12397 true Bd1: 12991660-13004056 Brachypodium distachyon
Bradi1g16075 2.0kb upstream 2.0kb upstream 2000 false Bd1: 12991660-12993659 Brachypodium distachyon
Bradi1g16075 2.0kb downstream 2.0kb downstream 12397 true Bd1: 12993660-13006056 Brachypodium distachyon
Bradi1g16075 2.0kb downstream 2.0kb downstream 2000 false Bd1: 13004057-13006056 Brachypodium distachyon
Bradi1g16075 5.0kb upstream 5.0kb upstream 15397 true Bd1: 12988660-13004056 Brachypodium distachyon
Bradi1g16075 5.0kb upstream 5.0kb upstream 5000 false Bd1: 12988660-12993659 Brachypodium distachyon
Bradi1g16075 5.0kb downstream 5.0kb downstream 15397 true Bd1: 12993660-13009056 Brachypodium distachyon
Bradi1g16075 5.0kb downstream 5.0kb downstream 5000 false Bd1: 13004057-13009056 Brachypodium distachyon
Bradi1g16075 10.0kb upstream 10.0kb upstream 20397 true Bd1: 12983660-13004056 Brachypodium distachyon
Bradi1g16075 10.0kb upstream 10.0kb upstream 10000 false Bd1: 12983660-12993659 Brachypodium distachyon
Bradi1g16075 10.0kb downstream 10.0kb downstream 20397 true Bd1: 12993660-13014056 Brachypodium distachyon
Bradi1g16075 10.0kb downstream 10.0kb downstream 10000 false Bd1: 13004057-13014056 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582031 5269 Grass View MSA
122048007 5273 Angiosperm View MSA
121347127 5274 Embryophyte View MSA
123427898 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.228       High
cufflinks 3.955        
cufflinks 4.261        
cufflinks 4.432        
cufflinks 3.284        
cufflinks 3.691        
cufflinks 3.119        
cufflinks 4.638        
cufflinks 3.623        
cufflinks 4.616        
cufflinks 4.581        
cufflinks 3.266        
cufflinks 5.142        
cufflinks 4.206        
cufflinks 7.675       High
cufflinks 3.955        
cufflinks 3.961        
cufflinks 1.054       Low
cufflinks 1.977       Low
cufflinks 3.952        
cufflinks 1.865       Low
cufflinks 5.05        
cufflinks 5.037        
cufflinks 4.129        
cufflinks 3.667        
cufflinks 4.636        
cufflinks 5.767       High
cufflinks 4.786        
cufflinks 4.801        
cufflinks 2.017       Low

0 Strain