Gene : Bradi1g16190 B. distachyon v3.1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Genomic Order:  2059
Name:  ? Bradi1g16190 Secondary Identifier:  ? PAC:32800792
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g16190 0.5kb upstream 0.5kb upstream 8449 true Bd1: 13104612-13113060 Brachypodium distachyon
Bradi1g16190 0.5kb upstream 0.5kb upstream 500 false Bd1: 13112561-13113060 Brachypodium distachyon
Bradi1g16190 0.5kb downstream 0.5kb downstream 8449 true Bd1: 13104112-13112560 Brachypodium distachyon
Bradi1g16190 0.5kb downstream 0.5kb downstream 500 false Bd1: 13104112-13104611 Brachypodium distachyon
Bradi1g16190 1.0kb upstream 1.0kb upstream 8949 true Bd1: 13104612-13113560 Brachypodium distachyon
Bradi1g16190 1.0kb upstream 1.0kb upstream 1000 false Bd1: 13112561-13113560 Brachypodium distachyon
Bradi1g16190 1.0kb downstream 1.0kb downstream 8949 true Bd1: 13103612-13112560 Brachypodium distachyon
Bradi1g16190 1.0kb downstream 1.0kb downstream 1000 false Bd1: 13103612-13104611 Brachypodium distachyon
Bradi1g16190 2.0kb upstream 2.0kb upstream 9949 true Bd1: 13104612-13114560 Brachypodium distachyon
Bradi1g16190 2.0kb upstream 2.0kb upstream 2000 false Bd1: 13112561-13114560 Brachypodium distachyon
Bradi1g16190 2.0kb downstream 2.0kb downstream 9949 true Bd1: 13102612-13112560 Brachypodium distachyon
Bradi1g16190 2.0kb downstream 2.0kb downstream 2000 false Bd1: 13102612-13104611 Brachypodium distachyon
Bradi1g16190 5.0kb upstream 5.0kb upstream 12949 true Bd1: 13104612-13117560 Brachypodium distachyon
Bradi1g16190 5.0kb upstream 5.0kb upstream 5000 false Bd1: 13112561-13117560 Brachypodium distachyon
Bradi1g16190 5.0kb downstream 5.0kb downstream 12949 true Bd1: 13099612-13112560 Brachypodium distachyon
Bradi1g16190 5.0kb downstream 5.0kb downstream 5000 false Bd1: 13099612-13104611 Brachypodium distachyon
Bradi1g16190 10.0kb upstream 10.0kb upstream 17949 true Bd1: 13104612-13122560 Brachypodium distachyon
Bradi1g16190 10.0kb upstream 10.0kb upstream 10000 false Bd1: 13112561-13122560 Brachypodium distachyon
Bradi1g16190 10.0kb downstream 10.0kb downstream 17949 true Bd1: 13094612-13112560 Brachypodium distachyon
Bradi1g16190 10.0kb downstream 10.0kb downstream 10000 false Bd1: 13094612-13104611 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588188 5269 Grass View MSA
122044164 5273 Angiosperm View MSA
121345857 5274 Embryophyte View MSA
123426722 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.956     High  
cufflinks 23.352     High  
cufflinks 25.766     High  
cufflinks 23.998     High  
cufflinks 11.996     High  
cufflinks 17.62     High  
cufflinks 17.681     High  
cufflinks 16.979     High  
cufflinks 18.474     High  
cufflinks 11.527     High  
cufflinks 31.499     High  
cufflinks 22.202     High  
cufflinks 17.527     High  
cufflinks 24.283     High  
cufflinks 15.72     High  
cufflinks 18.495     High  
cufflinks 11.727     High  
cufflinks 4.63       Low
cufflinks 11.522        
cufflinks 9.0        
cufflinks 11.657     High  
cufflinks 18.983     High  
cufflinks 20.196     High  
cufflinks 16.76     High  
cufflinks 15.364     High  
cufflinks 21.991     High  
cufflinks 20.119     High  
cufflinks 20.425     High  
cufflinks 20.58     High  
cufflinks 14.768     High  

0 Strain