Gene : Bradi1g16580 B. distachyon v3.1
Defline:  (1 of 5) PF11960 - Domain of unknown function (DUF3474) (DUF3474) Genomic Order:  2084
Name:  ? Bradi1g16580 Secondary Identifier:  ? PAC:32799766
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g16580 0.5kb upstream 0.5kb upstream 4047 true Bd1: 13405491-13409537 Brachypodium distachyon
Bradi1g16580 0.5kb upstream 0.5kb upstream 500 false Bd1: 13409038-13409537 Brachypodium distachyon
Bradi1g16580 0.5kb downstream 0.5kb downstream 4047 true Bd1: 13404991-13409037 Brachypodium distachyon
Bradi1g16580 0.5kb downstream 0.5kb downstream 500 false Bd1: 13404991-13405490 Brachypodium distachyon
Bradi1g16580 1.0kb upstream 1.0kb upstream 4547 true Bd1: 13405491-13410037 Brachypodium distachyon
Bradi1g16580 1.0kb upstream 1.0kb upstream 1000 false Bd1: 13409038-13410037 Brachypodium distachyon
Bradi1g16580 1.0kb downstream 1.0kb downstream 4547 true Bd1: 13404491-13409037 Brachypodium distachyon
Bradi1g16580 1.0kb downstream 1.0kb downstream 1000 false Bd1: 13404491-13405490 Brachypodium distachyon
Bradi1g16580 2.0kb upstream 2.0kb upstream 5547 true Bd1: 13405491-13411037 Brachypodium distachyon
Bradi1g16580 2.0kb upstream 2.0kb upstream 2000 false Bd1: 13409038-13411037 Brachypodium distachyon
Bradi1g16580 2.0kb downstream 2.0kb downstream 5547 true Bd1: 13403491-13409037 Brachypodium distachyon
Bradi1g16580 2.0kb downstream 2.0kb downstream 2000 false Bd1: 13403491-13405490 Brachypodium distachyon
Bradi1g16580 5.0kb upstream 5.0kb upstream 8547 true Bd1: 13405491-13414037 Brachypodium distachyon
Bradi1g16580 5.0kb upstream 5.0kb upstream 5000 false Bd1: 13409038-13414037 Brachypodium distachyon
Bradi1g16580 5.0kb downstream 5.0kb downstream 8547 true Bd1: 13400491-13409037 Brachypodium distachyon
Bradi1g16580 5.0kb downstream 5.0kb downstream 5000 false Bd1: 13400491-13405490 Brachypodium distachyon
Bradi1g16580 10.0kb upstream 10.0kb upstream 13547 true Bd1: 13405491-13419037 Brachypodium distachyon
Bradi1g16580 10.0kb upstream 10.0kb upstream 10000 false Bd1: 13409038-13419037 Brachypodium distachyon
Bradi1g16580 10.0kb downstream 10.0kb downstream 13547 true Bd1: 13395491-13409037 Brachypodium distachyon
Bradi1g16580 10.0kb downstream 10.0kb downstream 10000 false Bd1: 13395491-13405490 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584989 5269 Grass View MSA
122045494 5273 Angiosperm View MSA
121344489 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 71.634     High  
cufflinks 56.292     High  
cufflinks 34.841     High  
cufflinks 51.445     High  
cufflinks 17.203     High  
cufflinks 81.076     High  
cufflinks 64.437     High  
cufflinks 103.617     High High
cufflinks 82.586     High  
cufflinks 47.308     High  
cufflinks 24.03     High  
cufflinks 77.875     High  
cufflinks 85.063     High  
cufflinks 69.68     High  
cufflinks 86.109     High  
cufflinks 75.958     High  
cufflinks 56.793     High  
cufflinks 1.604       Low
cufflinks 17.178     High  
cufflinks 6.628       Low
cufflinks 18.304     High  
cufflinks 48.985     High  
cufflinks 97.346     High  
cufflinks 88.981     High  
cufflinks 79.198     High  
cufflinks 38.366     High  
cufflinks 108.682     High High
cufflinks 43.158     High  
cufflinks 60.926     High  
cufflinks 17.605     High  

0 Strain