Gene : Bradi1g17220 B. distachyon v3.1
Defline:  (1 of 1) PF00581//PF13616 - Rhodanese-like domain (Rhodanese) // PPIC-type PPIASE domain (Rotamase_3) Genomic Order:  2143
Name:  ? Bradi1g17220 Secondary Identifier:  ? PAC:32804061
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g17220 0.5kb upstream 0.5kb upstream 3449 true Bd1: 13804059-13807507 Brachypodium distachyon
Bradi1g17220 0.5kb upstream 0.5kb upstream 500 false Bd1: 13807008-13807507 Brachypodium distachyon
Bradi1g17220 0.5kb downstream 0.5kb downstream 3449 true Bd1: 13803559-13807007 Brachypodium distachyon
Bradi1g17220 0.5kb downstream 0.5kb downstream 500 false Bd1: 13803559-13804058 Brachypodium distachyon
Bradi1g17220 1.0kb upstream 1.0kb upstream 3949 true Bd1: 13804059-13808007 Brachypodium distachyon
Bradi1g17220 1.0kb upstream 1.0kb upstream 1000 false Bd1: 13807008-13808007 Brachypodium distachyon
Bradi1g17220 1.0kb downstream 1.0kb downstream 3949 true Bd1: 13803059-13807007 Brachypodium distachyon
Bradi1g17220 1.0kb downstream 1.0kb downstream 1000 false Bd1: 13803059-13804058 Brachypodium distachyon
Bradi1g17220 2.0kb upstream 2.0kb upstream 4949 true Bd1: 13804059-13809007 Brachypodium distachyon
Bradi1g17220 2.0kb upstream 2.0kb upstream 2000 false Bd1: 13807008-13809007 Brachypodium distachyon
Bradi1g17220 2.0kb downstream 2.0kb downstream 4949 true Bd1: 13802059-13807007 Brachypodium distachyon
Bradi1g17220 2.0kb downstream 2.0kb downstream 2000 false Bd1: 13802059-13804058 Brachypodium distachyon
Bradi1g17220 5.0kb upstream 5.0kb upstream 7949 true Bd1: 13804059-13812007 Brachypodium distachyon
Bradi1g17220 5.0kb upstream 5.0kb upstream 5000 false Bd1: 13807008-13812007 Brachypodium distachyon
Bradi1g17220 5.0kb downstream 5.0kb downstream 7949 true Bd1: 13799059-13807007 Brachypodium distachyon
Bradi1g17220 5.0kb downstream 5.0kb downstream 5000 false Bd1: 13799059-13804058 Brachypodium distachyon
Bradi1g17220 10.0kb upstream 10.0kb upstream 12949 true Bd1: 13804059-13817007 Brachypodium distachyon
Bradi1g17220 10.0kb upstream 10.0kb upstream 10000 false Bd1: 13807008-13817007 Brachypodium distachyon
Bradi1g17220 10.0kb downstream 10.0kb downstream 12949 true Bd1: 13794059-13807007 Brachypodium distachyon
Bradi1g17220 10.0kb downstream 10.0kb downstream 10000 false Bd1: 13794059-13804058 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577606 5269 Grass View MSA
122041568 5273 Angiosperm View MSA
123429014 5275 Viridiplantae View MSA
121344744 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.331     High  
cufflinks 14.181     High  
cufflinks 11.119     High  
cufflinks 13.468     High  
cufflinks 11.524     High  
cufflinks 16.237     High  
cufflinks 15.712     High  
cufflinks 15.118     High  
cufflinks 15.776     High  
cufflinks 13.103     High  
cufflinks 19.018     High High
cufflinks 16.21     High  
cufflinks 17.001     High  
cufflinks 18.697     High High
cufflinks 10.978     High  
cufflinks 17.642     High  
cufflinks 15.902     High  
cufflinks 4.147       Low
cufflinks 12.518        
cufflinks 6.5       Low
cufflinks 11.116        
cufflinks 12.897     High  
cufflinks 13.905     High  
cufflinks 17.322     High  
cufflinks 16.388     High  
cufflinks 11.718     High  
cufflinks 16.229     High  
cufflinks 11.088     High  
cufflinks 10.644        
cufflinks 11.206        

0 Strain