Gene : Bradi1g17340 B. distachyon v3.1
Defline:  (1 of 1) K00013 - histidinol dehydrogenase (hisD) Genomic Order:  2157
Name:  ? Bradi1g17340 Secondary Identifier:  ? PAC:32803684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon HISTSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g17340 0.5kb upstream 0.5kb upstream 4180 true Bd1: 13879197-13883376 Brachypodium distachyon
Bradi1g17340 0.5kb upstream 0.5kb upstream 500 false Bd1: 13879197-13879696 Brachypodium distachyon
Bradi1g17340 0.5kb downstream 0.5kb downstream 4180 true Bd1: 13879697-13883876 Brachypodium distachyon
Bradi1g17340 0.5kb downstream 0.5kb downstream 500 false Bd1: 13883377-13883876 Brachypodium distachyon
Bradi1g17340 1.0kb upstream 1.0kb upstream 4680 true Bd1: 13878697-13883376 Brachypodium distachyon
Bradi1g17340 1.0kb upstream 1.0kb upstream 1000 false Bd1: 13878697-13879696 Brachypodium distachyon
Bradi1g17340 1.0kb downstream 1.0kb downstream 4680 true Bd1: 13879697-13884376 Brachypodium distachyon
Bradi1g17340 1.0kb downstream 1.0kb downstream 1000 false Bd1: 13883377-13884376 Brachypodium distachyon
Bradi1g17340 2.0kb upstream 2.0kb upstream 5680 true Bd1: 13877697-13883376 Brachypodium distachyon
Bradi1g17340 2.0kb upstream 2.0kb upstream 2000 false Bd1: 13877697-13879696 Brachypodium distachyon
Bradi1g17340 2.0kb downstream 2.0kb downstream 5680 true Bd1: 13879697-13885376 Brachypodium distachyon
Bradi1g17340 2.0kb downstream 2.0kb downstream 2000 false Bd1: 13883377-13885376 Brachypodium distachyon
Bradi1g17340 5.0kb upstream 5.0kb upstream 8680 true Bd1: 13874697-13883376 Brachypodium distachyon
Bradi1g17340 5.0kb upstream 5.0kb upstream 5000 false Bd1: 13874697-13879696 Brachypodium distachyon
Bradi1g17340 5.0kb downstream 5.0kb downstream 8680 true Bd1: 13879697-13888376 Brachypodium distachyon
Bradi1g17340 5.0kb downstream 5.0kb downstream 5000 false Bd1: 13883377-13888376 Brachypodium distachyon
Bradi1g17340 10.0kb upstream 10.0kb upstream 13680 true Bd1: 13869697-13883376 Brachypodium distachyon
Bradi1g17340 10.0kb upstream 10.0kb upstream 10000 false Bd1: 13869697-13879696 Brachypodium distachyon
Bradi1g17340 10.0kb downstream 10.0kb downstream 13680 true Bd1: 13879697-13893376 Brachypodium distachyon
Bradi1g17340 10.0kb downstream 10.0kb downstream 10000 false Bd1: 13883377-13893376 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569562 5269 Grass View MSA
122046994 5273 Angiosperm View MSA
121351553 5274 Embryophyte View MSA
123424167 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.527     High  
cufflinks 28.119     High High
cufflinks 27.389     High High
cufflinks 28.342     High High
cufflinks 18.156     High  
cufflinks 23.674     High  
cufflinks 25.292     High  
cufflinks 20.31     High  
cufflinks 21.664     High  
cufflinks 19.097     High  
cufflinks 13.107     High Low
cufflinks 19.681     High  
cufflinks 8.133     High Low
cufflinks 11.768     High Low
cufflinks 13.638     High  
cufflinks 24.095     High  
cufflinks 23.918     High  
cufflinks 20.787     High  
cufflinks 23.531     High  
cufflinks 5.617       Low
cufflinks 17.516     High  
cufflinks 20.807     High  
cufflinks 17.708     High  
cufflinks 18.745     High  
cufflinks 21.932     High  
cufflinks 26.262     High  
cufflinks 13.082     High Low
cufflinks 22.812     High  
cufflinks 20.722     High  
cufflinks 21.215     High  

0 Strain