Gene : Bradi1g17997 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2247
Name:  ? Bradi1g17997 Secondary Identifier:  ? PAC:32805310
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g17997 0.5kb upstream 0.5kb upstream 7007 true Bd1: 14544298-14551304 Brachypodium distachyon
Bradi1g17997 0.5kb upstream 0.5kb upstream 500 false Bd1: 14544298-14544797 Brachypodium distachyon
Bradi1g17997 0.5kb downstream 0.5kb downstream 7007 true Bd1: 14544798-14551804 Brachypodium distachyon
Bradi1g17997 0.5kb downstream 0.5kb downstream 500 false Bd1: 14551305-14551804 Brachypodium distachyon
Bradi1g17997 1.0kb upstream 1.0kb upstream 7507 true Bd1: 14543798-14551304 Brachypodium distachyon
Bradi1g17997 1.0kb upstream 1.0kb upstream 1000 false Bd1: 14543798-14544797 Brachypodium distachyon
Bradi1g17997 1.0kb downstream 1.0kb downstream 7507 true Bd1: 14544798-14552304 Brachypodium distachyon
Bradi1g17997 1.0kb downstream 1.0kb downstream 1000 false Bd1: 14551305-14552304 Brachypodium distachyon
Bradi1g17997 2.0kb upstream 2.0kb upstream 8507 true Bd1: 14542798-14551304 Brachypodium distachyon
Bradi1g17997 2.0kb upstream 2.0kb upstream 2000 false Bd1: 14542798-14544797 Brachypodium distachyon
Bradi1g17997 2.0kb downstream 2.0kb downstream 8507 true Bd1: 14544798-14553304 Brachypodium distachyon
Bradi1g17997 2.0kb downstream 2.0kb downstream 2000 false Bd1: 14551305-14553304 Brachypodium distachyon
Bradi1g17997 5.0kb upstream 5.0kb upstream 11507 true Bd1: 14539798-14551304 Brachypodium distachyon
Bradi1g17997 5.0kb upstream 5.0kb upstream 5000 false Bd1: 14539798-14544797 Brachypodium distachyon
Bradi1g17997 5.0kb downstream 5.0kb downstream 11507 true Bd1: 14544798-14556304 Brachypodium distachyon
Bradi1g17997 5.0kb downstream 5.0kb downstream 5000 false Bd1: 14551305-14556304 Brachypodium distachyon
Bradi1g17997 10.0kb upstream 10.0kb upstream 16507 true Bd1: 14534798-14551304 Brachypodium distachyon
Bradi1g17997 10.0kb upstream 10.0kb upstream 10000 false Bd1: 14534798-14544797 Brachypodium distachyon
Bradi1g17997 10.0kb downstream 10.0kb downstream 16507 true Bd1: 14544798-14561304 Brachypodium distachyon
Bradi1g17997 10.0kb downstream 10.0kb downstream 10000 false Bd1: 14551305-14561304 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574738 5269 Grass View MSA
122041778 5273 Angiosperm View MSA
121309888 5274 Embryophyte View MSA
123347524 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.139       Low
cufflinks 0.462        
cufflinks 0.459        
cufflinks 0.413        
cufflinks 0.091       Low
cufflinks 0.361        
cufflinks 0.397        
cufflinks 0.348        
cufflinks 0.366        
cufflinks 0.42        
cufflinks 0.288        
cufflinks 0.313        
cufflinks 0.202        
cufflinks 0.182        
cufflinks 0.193        
cufflinks 0.314        
cufflinks 0.26        
cufflinks 0.513       High
cufflinks 0.189     Low  
cufflinks 0.141     Low Low
cufflinks 0.687       High
cufflinks 0.394        
cufflinks 0.399        
cufflinks 0.327        
cufflinks 0.323        
cufflinks 0.334        
cufflinks 0.137       Low
cufflinks 0.446        
cufflinks 0.379        
cufflinks 0.409        

0 Strain