Gene : Bradi1g17884 B. distachyon v3.1
Defline:  (1 of 5) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Genomic Order:  2235
Name:  ? Bradi1g17884 Secondary Identifier:  ? PAC:32799668
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-2541 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g17884 0.5kb upstream 0.5kb upstream 1311 true Bd1: 14482379-14483689 Brachypodium distachyon
Bradi1g17884 0.5kb upstream 0.5kb upstream 500 false Bd1: 14482379-14482878 Brachypodium distachyon
Bradi1g17884 0.5kb downstream 0.5kb downstream 1311 true Bd1: 14482879-14484189 Brachypodium distachyon
Bradi1g17884 0.5kb downstream 0.5kb downstream 500 false Bd1: 14483690-14484189 Brachypodium distachyon
Bradi1g17884 1.0kb upstream 1.0kb upstream 1811 true Bd1: 14481879-14483689 Brachypodium distachyon
Bradi1g17884 1.0kb upstream 1.0kb upstream 1000 false Bd1: 14481879-14482878 Brachypodium distachyon
Bradi1g17884 1.0kb downstream 1.0kb downstream 1811 true Bd1: 14482879-14484689 Brachypodium distachyon
Bradi1g17884 1.0kb downstream 1.0kb downstream 1000 false Bd1: 14483690-14484689 Brachypodium distachyon
Bradi1g17884 2.0kb upstream 2.0kb upstream 2811 true Bd1: 14480879-14483689 Brachypodium distachyon
Bradi1g17884 2.0kb upstream 2.0kb upstream 2000 false Bd1: 14480879-14482878 Brachypodium distachyon
Bradi1g17884 2.0kb downstream 2.0kb downstream 2811 true Bd1: 14482879-14485689 Brachypodium distachyon
Bradi1g17884 2.0kb downstream 2.0kb downstream 2000 false Bd1: 14483690-14485689 Brachypodium distachyon
Bradi1g17884 5.0kb upstream 5.0kb upstream 5811 true Bd1: 14477879-14483689 Brachypodium distachyon
Bradi1g17884 5.0kb upstream 5.0kb upstream 5000 false Bd1: 14477879-14482878 Brachypodium distachyon
Bradi1g17884 5.0kb downstream 5.0kb downstream 5811 true Bd1: 14482879-14488689 Brachypodium distachyon
Bradi1g17884 5.0kb downstream 5.0kb downstream 5000 false Bd1: 14483690-14488689 Brachypodium distachyon
Bradi1g17884 10.0kb upstream 10.0kb upstream 10811 true Bd1: 14472879-14483689 Brachypodium distachyon
Bradi1g17884 10.0kb upstream 10.0kb upstream 10000 false Bd1: 14472879-14482878 Brachypodium distachyon
Bradi1g17884 10.0kb downstream 10.0kb downstream 10811 true Bd1: 14482879-14493689 Brachypodium distachyon
Bradi1g17884 10.0kb downstream 10.0kb downstream 10000 false Bd1: 14483690-14493689 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029665 5273 Angiosperm View MSA
124588354 5269 Grass View MSA
121298968 5274 Embryophyte View MSA
123336900 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.545        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain