Gene : Bradi1g23610 B. distachyon v3.1
Defline:  (1 of 1) PTHR21649:SF13 - LHCA2 PROTEIN Genomic Order:  2958
Name:  ? Bradi1g23610 Secondary Identifier:  ? PAC:32804493
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g23610 0.5kb upstream 0.5kb upstream 2472 true Bd1: 19014436-19016907 Brachypodium distachyon
Bradi1g23610 0.5kb upstream 0.5kb upstream 500 false Bd1: 19016408-19016907 Brachypodium distachyon
Bradi1g23610 0.5kb downstream 0.5kb downstream 2472 true Bd1: 19013936-19016407 Brachypodium distachyon
Bradi1g23610 0.5kb downstream 0.5kb downstream 500 false Bd1: 19013936-19014435 Brachypodium distachyon
Bradi1g23610 1.0kb upstream 1.0kb upstream 2972 true Bd1: 19014436-19017407 Brachypodium distachyon
Bradi1g23610 1.0kb upstream 1.0kb upstream 1000 false Bd1: 19016408-19017407 Brachypodium distachyon
Bradi1g23610 1.0kb downstream 1.0kb downstream 2972 true Bd1: 19013436-19016407 Brachypodium distachyon
Bradi1g23610 1.0kb downstream 1.0kb downstream 1000 false Bd1: 19013436-19014435 Brachypodium distachyon
Bradi1g23610 2.0kb upstream 2.0kb upstream 3972 true Bd1: 19014436-19018407 Brachypodium distachyon
Bradi1g23610 2.0kb upstream 2.0kb upstream 2000 false Bd1: 19016408-19018407 Brachypodium distachyon
Bradi1g23610 2.0kb downstream 2.0kb downstream 3972 true Bd1: 19012436-19016407 Brachypodium distachyon
Bradi1g23610 2.0kb downstream 2.0kb downstream 2000 false Bd1: 19012436-19014435 Brachypodium distachyon
Bradi1g23610 5.0kb upstream 5.0kb upstream 6972 true Bd1: 19014436-19021407 Brachypodium distachyon
Bradi1g23610 5.0kb upstream 5.0kb upstream 5000 false Bd1: 19016408-19021407 Brachypodium distachyon
Bradi1g23610 5.0kb downstream 5.0kb downstream 6972 true Bd1: 19009436-19016407 Brachypodium distachyon
Bradi1g23610 5.0kb downstream 5.0kb downstream 5000 false Bd1: 19009436-19014435 Brachypodium distachyon
Bradi1g23610 10.0kb upstream 10.0kb upstream 11972 true Bd1: 19014436-19026407 Brachypodium distachyon
Bradi1g23610 10.0kb upstream 10.0kb upstream 10000 false Bd1: 19016408-19026407 Brachypodium distachyon
Bradi1g23610 10.0kb downstream 10.0kb downstream 11972 true Bd1: 19004436-19016407 Brachypodium distachyon
Bradi1g23610 10.0kb downstream 10.0kb downstream 10000 false Bd1: 19004436-19014435 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586394 5269 Grass View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 851.49     High  
cufflinks 747.13     High  
cufflinks 170.044     High Low
cufflinks 487.814     High  
cufflinks 1109.402     High  
cufflinks 1502.056     High  
cufflinks 1568.322     High  
cufflinks 1506.958     High  
cufflinks 1717.489     High  
cufflinks 1223.064     High  
cufflinks 1681.992     High  
cufflinks 1136.85     High  
cufflinks 2217.649     High High
cufflinks 2664.46     High High
cufflinks 1016.758     High  
cufflinks 1294.309     High  
cufflinks 1527.447     High  
cufflinks 8.64       Low
cufflinks 655.691     High  
cufflinks 229.646     High  
cufflinks 756.321     High  
cufflinks 748.159     High  
cufflinks 1396.732     High  
cufflinks 1609.657     High  
cufflinks 1650.947     High  
cufflinks 158.952     High Low
cufflinks 2046.381     High  
cufflinks 213.863     High  
cufflinks 425.362     High  
cufflinks 501.605     High  

0 Strain