Gene : Bradi1g24100 B. distachyon v3.1

Defline:  (1 of 1) PTHR34798:SF2 - PROTEIN TIME FOR COFFEE Genomic Order:  3021
Name:  ? Bradi1g24100 Secondary Identifier:  ? PAC:32800462

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g24100 0.5kb upstream 0.5kb upstream 7664 true Bd1: 19367607-19375270 Brachypodium distachyon
Bradi1g24100 0.5kb upstream 0.5kb upstream 500 false Bd1: 19367607-19368106 Brachypodium distachyon
Bradi1g24100 0.5kb downstream 0.5kb downstream 7664 true Bd1: 19368107-19375770 Brachypodium distachyon
Bradi1g24100 0.5kb downstream 0.5kb downstream 500 false Bd1: 19375271-19375770 Brachypodium distachyon
Bradi1g24100 1.0kb upstream 1.0kb upstream 8164 true Bd1: 19367107-19375270 Brachypodium distachyon
Bradi1g24100 1.0kb upstream 1.0kb upstream 1000 false Bd1: 19367107-19368106 Brachypodium distachyon
Bradi1g24100 1.0kb downstream 1.0kb downstream 8164 true Bd1: 19368107-19376270 Brachypodium distachyon
Bradi1g24100 1.0kb downstream 1.0kb downstream 1000 false Bd1: 19375271-19376270 Brachypodium distachyon
Bradi1g24100 2.0kb upstream 2.0kb upstream 9164 true Bd1: 19366107-19375270 Brachypodium distachyon
Bradi1g24100 2.0kb upstream 2.0kb upstream 2000 false Bd1: 19366107-19368106 Brachypodium distachyon
Bradi1g24100 2.0kb downstream 2.0kb downstream 9164 true Bd1: 19368107-19377270 Brachypodium distachyon
Bradi1g24100 2.0kb downstream 2.0kb downstream 2000 false Bd1: 19375271-19377270 Brachypodium distachyon
Bradi1g24100 5.0kb upstream 5.0kb upstream 12164 true Bd1: 19363107-19375270 Brachypodium distachyon
Bradi1g24100 5.0kb upstream 5.0kb upstream 5000 false Bd1: 19363107-19368106 Brachypodium distachyon
Bradi1g24100 5.0kb downstream 5.0kb downstream 12164 true Bd1: 19368107-19380270 Brachypodium distachyon
Bradi1g24100 5.0kb downstream 5.0kb downstream 5000 false Bd1: 19375271-19380270 Brachypodium distachyon
Bradi1g24100 10.0kb upstream 10.0kb upstream 17164 true Bd1: 19358107-19375270 Brachypodium distachyon
Bradi1g24100 10.0kb upstream 10.0kb upstream 10000 false Bd1: 19358107-19368106 Brachypodium distachyon
Bradi1g24100 10.0kb downstream 10.0kb downstream 17164 true Bd1: 19368107-19385270 Brachypodium distachyon
Bradi1g24100 10.0kb downstream 10.0kb downstream 10000 false Bd1: 19375271-19385270 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586693 5269 Grass View MSA
122049796 5273 Angiosperm View MSA
121350697 5274 Embryophyte View MSA
123381850 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.043     High  
cufflinks 61.485     High High
cufflinks 61.973     High High
cufflinks 34.998     High  
cufflinks 12.512     High Low
cufflinks 37.239     High  
cufflinks 44.029     High  
cufflinks 38.769     High  
cufflinks 38.616     High  
cufflinks 22.447     High  
cufflinks 42.226     High  
cufflinks 37.601     High  
cufflinks 33.612     High  
cufflinks 21.775     High  
cufflinks 24.343     High  
cufflinks 37.501     High  
cufflinks 12.259     High Low
cufflinks 48.566     High  
cufflinks 30.87     High  
cufflinks 10.136       Low
cufflinks 16.381     High  
cufflinks 47.541     High  
cufflinks 37.045     High  
cufflinks 28.555     High  
cufflinks 23.034     High  
cufflinks 51.016     High High
cufflinks 36.1     High  
cufflinks 50.148     High High
cufflinks 42.735     High  
cufflinks 33.431     High  

0 Strain