Gene : Bradi1g24720 B. distachyon v3.1
Defline:  (1 of 2) PTHR23336//PTHR23336:SF25 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Genomic Order:  3110
Name:  ? Bradi1g24720 Secondary Identifier:  ? PAC:32795969
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g24720 0.5kb upstream 0.5kb upstream 9114 true Bd1: 19978237-19987350 Brachypodium distachyon
Bradi1g24720 0.5kb upstream 0.5kb upstream 500 false Bd1: 19986851-19987350 Brachypodium distachyon
Bradi1g24720 0.5kb downstream 0.5kb downstream 9114 true Bd1: 19977737-19986850 Brachypodium distachyon
Bradi1g24720 0.5kb downstream 0.5kb downstream 500 false Bd1: 19977737-19978236 Brachypodium distachyon
Bradi1g24720 1.0kb upstream 1.0kb upstream 9614 true Bd1: 19978237-19987850 Brachypodium distachyon
Bradi1g24720 1.0kb upstream 1.0kb upstream 1000 false Bd1: 19986851-19987850 Brachypodium distachyon
Bradi1g24720 1.0kb downstream 1.0kb downstream 9614 true Bd1: 19977237-19986850 Brachypodium distachyon
Bradi1g24720 1.0kb downstream 1.0kb downstream 1000 false Bd1: 19977237-19978236 Brachypodium distachyon
Bradi1g24720 2.0kb upstream 2.0kb upstream 10614 true Bd1: 19978237-19988850 Brachypodium distachyon
Bradi1g24720 2.0kb upstream 2.0kb upstream 2000 false Bd1: 19986851-19988850 Brachypodium distachyon
Bradi1g24720 2.0kb downstream 2.0kb downstream 10614 true Bd1: 19976237-19986850 Brachypodium distachyon
Bradi1g24720 2.0kb downstream 2.0kb downstream 2000 false Bd1: 19976237-19978236 Brachypodium distachyon
Bradi1g24720 5.0kb upstream 5.0kb upstream 13614 true Bd1: 19978237-19991850 Brachypodium distachyon
Bradi1g24720 5.0kb upstream 5.0kb upstream 5000 false Bd1: 19986851-19991850 Brachypodium distachyon
Bradi1g24720 5.0kb downstream 5.0kb downstream 13614 true Bd1: 19973237-19986850 Brachypodium distachyon
Bradi1g24720 5.0kb downstream 5.0kb downstream 5000 false Bd1: 19973237-19978236 Brachypodium distachyon
Bradi1g24720 10.0kb upstream 10.0kb upstream 18614 true Bd1: 19978237-19996850 Brachypodium distachyon
Bradi1g24720 10.0kb upstream 10.0kb upstream 10000 false Bd1: 19986851-19996850 Brachypodium distachyon
Bradi1g24720 10.0kb downstream 10.0kb downstream 18614 true Bd1: 19968237-19986850 Brachypodium distachyon
Bradi1g24720 10.0kb downstream 10.0kb downstream 10000 false Bd1: 19968237-19978236 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573908 5269 Grass View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.154        
cufflinks 1.435        
cufflinks 1.691        
cufflinks 0.998        
cufflinks 1.087        
cufflinks 1.288        
cufflinks 1.249        
cufflinks 1.689        
cufflinks 1.454        
cufflinks 1.182        
cufflinks 2.273       High
cufflinks 1.332        
cufflinks 1.291        
cufflinks 1.292        
cufflinks 1.051        
cufflinks 1.296        
cufflinks 0.973        
cufflinks 2.228       High
cufflinks 2.101       High
cufflinks 0.888        
cufflinks 1.125        
cufflinks 2.379       High
cufflinks 1.81        
cufflinks 1.256        
cufflinks 0.972        
cufflinks 1.547        
cufflinks 1.644        
cufflinks 1.67        
cufflinks 1.645        
cufflinks 1.245        

0 Strain