Gene : Bradi1g25780 B. distachyon v3.1
Defline:  (1 of 1) PTHR12202:SF0 - PROTEIN F58B3.4 Genomic Order:  3234
Name:  ? Bradi1g25780 Secondary Identifier:  ? PAC:32803110
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g25780 0.5kb upstream 0.5kb upstream 5732 true Bd1: 20921292-20927023 Brachypodium distachyon
Bradi1g25780 0.5kb upstream 0.5kb upstream 500 false Bd1: 20926524-20927023 Brachypodium distachyon
Bradi1g25780 0.5kb downstream 0.5kb downstream 5732 true Bd1: 20920792-20926523 Brachypodium distachyon
Bradi1g25780 0.5kb downstream 0.5kb downstream 500 false Bd1: 20920792-20921291 Brachypodium distachyon
Bradi1g25780 1.0kb upstream 1.0kb upstream 6232 true Bd1: 20921292-20927523 Brachypodium distachyon
Bradi1g25780 1.0kb upstream 1.0kb upstream 1000 false Bd1: 20926524-20927523 Brachypodium distachyon
Bradi1g25780 1.0kb downstream 1.0kb downstream 6232 true Bd1: 20920292-20926523 Brachypodium distachyon
Bradi1g25780 1.0kb downstream 1.0kb downstream 1000 false Bd1: 20920292-20921291 Brachypodium distachyon
Bradi1g25780 2.0kb upstream 2.0kb upstream 7232 true Bd1: 20921292-20928523 Brachypodium distachyon
Bradi1g25780 2.0kb upstream 2.0kb upstream 2000 false Bd1: 20926524-20928523 Brachypodium distachyon
Bradi1g25780 2.0kb downstream 2.0kb downstream 7232 true Bd1: 20919292-20926523 Brachypodium distachyon
Bradi1g25780 2.0kb downstream 2.0kb downstream 2000 false Bd1: 20919292-20921291 Brachypodium distachyon
Bradi1g25780 5.0kb upstream 5.0kb upstream 10232 true Bd1: 20921292-20931523 Brachypodium distachyon
Bradi1g25780 5.0kb upstream 5.0kb upstream 5000 false Bd1: 20926524-20931523 Brachypodium distachyon
Bradi1g25780 5.0kb downstream 5.0kb downstream 10232 true Bd1: 20916292-20926523 Brachypodium distachyon
Bradi1g25780 5.0kb downstream 5.0kb downstream 5000 false Bd1: 20916292-20921291 Brachypodium distachyon
Bradi1g25780 10.0kb upstream 10.0kb upstream 15232 true Bd1: 20921292-20936523 Brachypodium distachyon
Bradi1g25780 10.0kb upstream 10.0kb upstream 10000 false Bd1: 20926524-20936523 Brachypodium distachyon
Bradi1g25780 10.0kb downstream 10.0kb downstream 15232 true Bd1: 20911292-20926523 Brachypodium distachyon
Bradi1g25780 10.0kb downstream 10.0kb downstream 10000 false Bd1: 20911292-20921291 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575777 5269 Grass View MSA
122046385 5273 Angiosperm View MSA
121346233 5274 Embryophyte View MSA
123423804 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.48        
cufflinks 7.374        
cufflinks 6.646        
cufflinks 6.086        
cufflinks 2.575       Low
cufflinks 6.416        
cufflinks 5.857        
cufflinks 4.399        
cufflinks 5.83        
cufflinks 3.917        
cufflinks 3.071        
cufflinks 6.173        
cufflinks 1.483       Low
cufflinks 2.157       Low
cufflinks 2.734       Low
cufflinks 6.101        
cufflinks 6.081        
cufflinks 9.837       High
cufflinks 4.938        
cufflinks 1.76       Low
cufflinks 6.279        
cufflinks 5.854        
cufflinks 4.17        
cufflinks 4.978        
cufflinks 5.929        
cufflinks 5.627        
cufflinks 2.026       Low
cufflinks 5.855        
cufflinks 5.537        
cufflinks 7.692       High

0 Strain