Gene : Bradi1g21440 B. distachyon v3.1
Defline:  (1 of 5) 2.6.1.83 - LL-diaminopimelate aminotransferase / LL-diaminopimelate transaminase Genomic Order:  2686
Name:  ? Bradi1g21440 Secondary Identifier:  ? PAC:32799600
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5097 Brachypodium distachyon pathologic  
Bdistachyon PWY-724 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g21440 0.5kb upstream 0.5kb upstream 3861 true Bd1: 17271350-17275210 Brachypodium distachyon
Bradi1g21440 0.5kb upstream 0.5kb upstream 500 false Bd1: 17274711-17275210 Brachypodium distachyon
Bradi1g21440 0.5kb downstream 0.5kb downstream 3861 true Bd1: 17270850-17274710 Brachypodium distachyon
Bradi1g21440 0.5kb downstream 0.5kb downstream 500 false Bd1: 17270850-17271349 Brachypodium distachyon
Bradi1g21440 1.0kb upstream 1.0kb upstream 4361 true Bd1: 17271350-17275710 Brachypodium distachyon
Bradi1g21440 1.0kb upstream 1.0kb upstream 1000 false Bd1: 17274711-17275710 Brachypodium distachyon
Bradi1g21440 1.0kb downstream 1.0kb downstream 4361 true Bd1: 17270350-17274710 Brachypodium distachyon
Bradi1g21440 1.0kb downstream 1.0kb downstream 1000 false Bd1: 17270350-17271349 Brachypodium distachyon
Bradi1g21440 2.0kb upstream 2.0kb upstream 5361 true Bd1: 17271350-17276710 Brachypodium distachyon
Bradi1g21440 2.0kb upstream 2.0kb upstream 2000 false Bd1: 17274711-17276710 Brachypodium distachyon
Bradi1g21440 2.0kb downstream 2.0kb downstream 5361 true Bd1: 17269350-17274710 Brachypodium distachyon
Bradi1g21440 2.0kb downstream 2.0kb downstream 2000 false Bd1: 17269350-17271349 Brachypodium distachyon
Bradi1g21440 5.0kb upstream 5.0kb upstream 8361 true Bd1: 17271350-17279710 Brachypodium distachyon
Bradi1g21440 5.0kb upstream 5.0kb upstream 5000 false Bd1: 17274711-17279710 Brachypodium distachyon
Bradi1g21440 5.0kb downstream 5.0kb downstream 8361 true Bd1: 17266350-17274710 Brachypodium distachyon
Bradi1g21440 5.0kb downstream 5.0kb downstream 5000 false Bd1: 17266350-17271349 Brachypodium distachyon
Bradi1g21440 10.0kb upstream 10.0kb upstream 13361 true Bd1: 17271350-17284710 Brachypodium distachyon
Bradi1g21440 10.0kb upstream 10.0kb upstream 10000 false Bd1: 17274711-17284710 Brachypodium distachyon
Bradi1g21440 10.0kb downstream 10.0kb downstream 13361 true Bd1: 17261350-17274710 Brachypodium distachyon
Bradi1g21440 10.0kb downstream 10.0kb downstream 10000 false Bd1: 17261350-17271349 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590449 5269 Grass View MSA
122045161 5273 Angiosperm View MSA
121344343 5274 Embryophyte View MSA
123424947 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.496        
cufflinks 12.226     High High
cufflinks 10.808     High  
cufflinks 9.768        
cufflinks 3.849        
cufflinks 9.929     High  
cufflinks 10.142     High  
cufflinks 7.49        
cufflinks 8.672        
cufflinks 4.949        
cufflinks 1.704       Low
cufflinks 7.643        
cufflinks 1.373       Low
cufflinks 1.168       Low
cufflinks 2.859        
cufflinks 9.917     High  
cufflinks 8.461        
cufflinks 15.652     High High
cufflinks 7.092        
cufflinks 0.936       Low
cufflinks 9.116        
cufflinks 7.653        
cufflinks 6.821        
cufflinks 7.253        
cufflinks 9.069        
cufflinks 7.502        
cufflinks 1.55       Low
cufflinks 5.605        
cufflinks 6.298        
cufflinks 11.384     High  

0 Strain