Gene : Bradi1g21400 B. distachyon v3.1
Defline:  (1 of 1) K15171 - transcription elongation factor SPT4 (SUPT4H1, SPT4) Genomic Order:  2680
Name:  ? Bradi1g21400 Secondary Identifier:  ? PAC:32804452
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g21400 0.5kb upstream 0.5kb upstream 3345 true Bd1: 17217028-17220372 Brachypodium distachyon
Bradi1g21400 0.5kb upstream 0.5kb upstream 500 false Bd1: 17219873-17220372 Brachypodium distachyon
Bradi1g21400 0.5kb downstream 0.5kb downstream 3345 true Bd1: 17216528-17219872 Brachypodium distachyon
Bradi1g21400 0.5kb downstream 0.5kb downstream 500 false Bd1: 17216528-17217027 Brachypodium distachyon
Bradi1g21400 1.0kb upstream 1.0kb upstream 3845 true Bd1: 17217028-17220872 Brachypodium distachyon
Bradi1g21400 1.0kb upstream 1.0kb upstream 1000 false Bd1: 17219873-17220872 Brachypodium distachyon
Bradi1g21400 1.0kb downstream 1.0kb downstream 3845 true Bd1: 17216028-17219872 Brachypodium distachyon
Bradi1g21400 1.0kb downstream 1.0kb downstream 1000 false Bd1: 17216028-17217027 Brachypodium distachyon
Bradi1g21400 2.0kb upstream 2.0kb upstream 4845 true Bd1: 17217028-17221872 Brachypodium distachyon
Bradi1g21400 2.0kb upstream 2.0kb upstream 2000 false Bd1: 17219873-17221872 Brachypodium distachyon
Bradi1g21400 2.0kb downstream 2.0kb downstream 4845 true Bd1: 17215028-17219872 Brachypodium distachyon
Bradi1g21400 2.0kb downstream 2.0kb downstream 2000 false Bd1: 17215028-17217027 Brachypodium distachyon
Bradi1g21400 5.0kb upstream 5.0kb upstream 7845 true Bd1: 17217028-17224872 Brachypodium distachyon
Bradi1g21400 5.0kb upstream 5.0kb upstream 5000 false Bd1: 17219873-17224872 Brachypodium distachyon
Bradi1g21400 5.0kb downstream 5.0kb downstream 7845 true Bd1: 17212028-17219872 Brachypodium distachyon
Bradi1g21400 5.0kb downstream 5.0kb downstream 5000 false Bd1: 17212028-17217027 Brachypodium distachyon
Bradi1g21400 10.0kb upstream 10.0kb upstream 12845 true Bd1: 17217028-17229872 Brachypodium distachyon
Bradi1g21400 10.0kb upstream 10.0kb upstream 10000 false Bd1: 17219873-17229872 Brachypodium distachyon
Bradi1g21400 10.0kb downstream 10.0kb downstream 12845 true Bd1: 17207028-17219872 Brachypodium distachyon
Bradi1g21400 10.0kb downstream 10.0kb downstream 10000 false Bd1: 17207028-17217027 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585745 5269 Grass View MSA
122042342 5273 Angiosperm View MSA
121345840 5274 Embryophyte View MSA
123426410 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.449     High  
cufflinks 7.928        
cufflinks 9.488        
cufflinks 11.969     High  
cufflinks 12.708     High  
cufflinks 7.22        
cufflinks 8.616        
cufflinks 7.736        
cufflinks 7.869        
cufflinks 20.303     High High
cufflinks 7.732        
cufflinks 5.839       Low
cufflinks 6.459       Low
cufflinks 8.068     High  
cufflinks 10.517     High  
cufflinks 6.193       Low
cufflinks 14.565     High  
cufflinks 8.169        
cufflinks 16.611     High  
cufflinks 44.34     High High
cufflinks 18.2     High  
cufflinks 8.044        
cufflinks 8.257        
cufflinks 7.109        
cufflinks 10.278     High  
cufflinks 17.374     High  
cufflinks 8.36        
cufflinks 18.526     High  
cufflinks 13.953     High  
cufflinks 9.669        

0 Strain