Gene : Bradi1g21980 B. distachyon v3.1
Defline:  (1 of 1) PTHR11945:SF155 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL8-RELATED Genomic Order:  2756
Name:  ? Bradi1g21980 Secondary Identifier:  ? PAC:32803475
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g21980 0.5kb upstream 0.5kb upstream 8737 true Bd1: 17688734-17697470 Brachypodium distachyon
Bradi1g21980 0.5kb upstream 0.5kb upstream 500 false Bd1: 17696971-17697470 Brachypodium distachyon
Bradi1g21980 0.5kb downstream 0.5kb downstream 8737 true Bd1: 17688234-17696970 Brachypodium distachyon
Bradi1g21980 0.5kb downstream 0.5kb downstream 500 false Bd1: 17688234-17688733 Brachypodium distachyon
Bradi1g21980 1.0kb upstream 1.0kb upstream 9237 true Bd1: 17688734-17697970 Brachypodium distachyon
Bradi1g21980 1.0kb upstream 1.0kb upstream 1000 false Bd1: 17696971-17697970 Brachypodium distachyon
Bradi1g21980 1.0kb downstream 1.0kb downstream 9237 true Bd1: 17687734-17696970 Brachypodium distachyon
Bradi1g21980 1.0kb downstream 1.0kb downstream 1000 false Bd1: 17687734-17688733 Brachypodium distachyon
Bradi1g21980 2.0kb upstream 2.0kb upstream 10237 true Bd1: 17688734-17698970 Brachypodium distachyon
Bradi1g21980 2.0kb upstream 2.0kb upstream 2000 false Bd1: 17696971-17698970 Brachypodium distachyon
Bradi1g21980 2.0kb downstream 2.0kb downstream 10237 true Bd1: 17686734-17696970 Brachypodium distachyon
Bradi1g21980 2.0kb downstream 2.0kb downstream 2000 false Bd1: 17686734-17688733 Brachypodium distachyon
Bradi1g21980 5.0kb upstream 5.0kb upstream 13237 true Bd1: 17688734-17701970 Brachypodium distachyon
Bradi1g21980 5.0kb upstream 5.0kb upstream 5000 false Bd1: 17696971-17701970 Brachypodium distachyon
Bradi1g21980 5.0kb downstream 5.0kb downstream 13237 true Bd1: 17683734-17696970 Brachypodium distachyon
Bradi1g21980 5.0kb downstream 5.0kb downstream 5000 false Bd1: 17683734-17688733 Brachypodium distachyon
Bradi1g21980 10.0kb upstream 10.0kb upstream 18237 true Bd1: 17688734-17706970 Brachypodium distachyon
Bradi1g21980 10.0kb upstream 10.0kb upstream 10000 false Bd1: 17696971-17706970 Brachypodium distachyon
Bradi1g21980 10.0kb downstream 10.0kb downstream 18237 true Bd1: 17678734-17696970 Brachypodium distachyon
Bradi1g21980 10.0kb downstream 10.0kb downstream 10000 false Bd1: 17678734-17688733 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041064 5273 Angiosperm View MSA
124575923 5269 Grass View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.024     Low  
cufflinks 0.001     Low  
cufflinks 0.001     Low  
cufflinks 0.001     Low  
cufflinks 0.019     Low  
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.006     Low  
cufflinks 0.004     Low  
cufflinks 0.004     Low  
cufflinks 0.004     Low  
cufflinks 0.003     Low  
cufflinks 0.002     Low  
cufflinks 0.001     Low  
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low  
cufflinks 0.008     Low  
cufflinks 0.038     Low  
cufflinks 7.151       High
cufflinks 0.006     Low  
cufflinks 0.013     Low  
cufflinks 0.001     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 10.807     High High
cufflinks 0.005     Low  
cufflinks 0.003     Low  
cufflinks 0.965       High

0 Strain