Gene : Bradi1g21907 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2742
Name:  ? Bradi1g21907 Secondary Identifier:  ? PAC:32804877
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g21907 0.5kb upstream 0.5kb upstream 3878 true Bd1: 17605187-17609064 Brachypodium distachyon
Bradi1g21907 0.5kb upstream 0.5kb upstream 500 false Bd1: 17608565-17609064 Brachypodium distachyon
Bradi1g21907 0.5kb downstream 0.5kb downstream 3878 true Bd1: 17604687-17608564 Brachypodium distachyon
Bradi1g21907 0.5kb downstream 0.5kb downstream 500 false Bd1: 17604687-17605186 Brachypodium distachyon
Bradi1g21907 1.0kb upstream 1.0kb upstream 4378 true Bd1: 17605187-17609564 Brachypodium distachyon
Bradi1g21907 1.0kb upstream 1.0kb upstream 1000 false Bd1: 17608565-17609564 Brachypodium distachyon
Bradi1g21907 1.0kb downstream 1.0kb downstream 4378 true Bd1: 17604187-17608564 Brachypodium distachyon
Bradi1g21907 1.0kb downstream 1.0kb downstream 1000 false Bd1: 17604187-17605186 Brachypodium distachyon
Bradi1g21907 2.0kb upstream 2.0kb upstream 5378 true Bd1: 17605187-17610564 Brachypodium distachyon
Bradi1g21907 2.0kb upstream 2.0kb upstream 2000 false Bd1: 17608565-17610564 Brachypodium distachyon
Bradi1g21907 2.0kb downstream 2.0kb downstream 5378 true Bd1: 17603187-17608564 Brachypodium distachyon
Bradi1g21907 2.0kb downstream 2.0kb downstream 2000 false Bd1: 17603187-17605186 Brachypodium distachyon
Bradi1g21907 5.0kb upstream 5.0kb upstream 8378 true Bd1: 17605187-17613564 Brachypodium distachyon
Bradi1g21907 5.0kb upstream 5.0kb upstream 5000 false Bd1: 17608565-17613564 Brachypodium distachyon
Bradi1g21907 5.0kb downstream 5.0kb downstream 8378 true Bd1: 17600187-17608564 Brachypodium distachyon
Bradi1g21907 5.0kb downstream 5.0kb downstream 5000 false Bd1: 17600187-17605186 Brachypodium distachyon
Bradi1g21907 10.0kb upstream 10.0kb upstream 13378 true Bd1: 17605187-17618564 Brachypodium distachyon
Bradi1g21907 10.0kb upstream 10.0kb upstream 10000 false Bd1: 17608565-17618564 Brachypodium distachyon
Bradi1g21907 10.0kb downstream 10.0kb downstream 13378 true Bd1: 17595187-17608564 Brachypodium distachyon
Bradi1g21907 10.0kb downstream 10.0kb downstream 10000 false Bd1: 17595187-17605186 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026168 5273 Angiosperm View MSA
124576020 5269 Grass View MSA
121296211 5274 Embryophyte View MSA
123334413 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.235        
cufflinks 0.964       High
cufflinks 0.484        
cufflinks 0.644        
cufflinks 0.075     Low Low
cufflinks 0.524        
cufflinks 0.682       High
cufflinks 0.257        
cufflinks 0.436        
cufflinks 0.136        
cufflinks 0.199        
cufflinks 0.351        
cufflinks 0.09       Low
cufflinks 0.112        
cufflinks 0.1        
cufflinks 0.535        
cufflinks 0.171        
cufflinks 0.873       High
cufflinks 0.198     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.355        
cufflinks 0.318        
cufflinks 0.229        
cufflinks 0.223        
cufflinks 0.388        
cufflinks 0.296        
cufflinks 0.106        
cufflinks 0.214        
cufflinks 0.256        
cufflinks 0.439        

0 Strain