Gene : Bradi1g22520 B. distachyon v3.1
Defline:  (1 of 1) PTHR13748:SF31 - COBW DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  2818
Name:  ? Bradi1g22520 Secondary Identifier:  ? PAC:32799051
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g22520 0.5kb upstream 0.5kb upstream 4437 true Bd1: 18067209-18071645 Brachypodium distachyon
Bradi1g22520 0.5kb upstream 0.5kb upstream 500 false Bd1: 18071146-18071645 Brachypodium distachyon
Bradi1g22520 0.5kb downstream 0.5kb downstream 4437 true Bd1: 18066709-18071145 Brachypodium distachyon
Bradi1g22520 0.5kb downstream 0.5kb downstream 500 false Bd1: 18066709-18067208 Brachypodium distachyon
Bradi1g22520 1.0kb upstream 1.0kb upstream 4937 true Bd1: 18067209-18072145 Brachypodium distachyon
Bradi1g22520 1.0kb upstream 1.0kb upstream 1000 false Bd1: 18071146-18072145 Brachypodium distachyon
Bradi1g22520 1.0kb downstream 1.0kb downstream 4937 true Bd1: 18066209-18071145 Brachypodium distachyon
Bradi1g22520 1.0kb downstream 1.0kb downstream 1000 false Bd1: 18066209-18067208 Brachypodium distachyon
Bradi1g22520 2.0kb upstream 2.0kb upstream 5937 true Bd1: 18067209-18073145 Brachypodium distachyon
Bradi1g22520 2.0kb upstream 2.0kb upstream 2000 false Bd1: 18071146-18073145 Brachypodium distachyon
Bradi1g22520 2.0kb downstream 2.0kb downstream 5937 true Bd1: 18065209-18071145 Brachypodium distachyon
Bradi1g22520 2.0kb downstream 2.0kb downstream 2000 false Bd1: 18065209-18067208 Brachypodium distachyon
Bradi1g22520 5.0kb upstream 5.0kb upstream 8937 true Bd1: 18067209-18076145 Brachypodium distachyon
Bradi1g22520 5.0kb upstream 5.0kb upstream 5000 false Bd1: 18071146-18076145 Brachypodium distachyon
Bradi1g22520 5.0kb downstream 5.0kb downstream 8937 true Bd1: 18062209-18071145 Brachypodium distachyon
Bradi1g22520 5.0kb downstream 5.0kb downstream 5000 false Bd1: 18062209-18067208 Brachypodium distachyon
Bradi1g22520 10.0kb upstream 10.0kb upstream 13937 true Bd1: 18067209-18081145 Brachypodium distachyon
Bradi1g22520 10.0kb upstream 10.0kb upstream 10000 false Bd1: 18071146-18081145 Brachypodium distachyon
Bradi1g22520 10.0kb downstream 10.0kb downstream 13937 true Bd1: 18057209-18071145 Brachypodium distachyon
Bradi1g22520 10.0kb downstream 10.0kb downstream 10000 false Bd1: 18057209-18067208 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570550 5269 Grass View MSA
122044727 5273 Angiosperm View MSA
121345063 5274 Embryophyte View MSA
123428327 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.56       Low
cufflinks 9.8       High
cufflinks 8.328        
cufflinks 9.224       High
cufflinks 4.212       Low
cufflinks 8.089        
cufflinks 8.742        
cufflinks 6.94        
cufflinks 7.465        
cufflinks 7.26        
cufflinks 6.091        
cufflinks 7.262        
cufflinks 6.072        
cufflinks 6.112        
cufflinks 5.605        
cufflinks 8.433        
cufflinks 5.255        
cufflinks 8.722        
cufflinks 6.605        
cufflinks 3.792       Low
cufflinks 6.884        
cufflinks 7.472        
cufflinks 6.988        
cufflinks 7.478        
cufflinks 8.419        
cufflinks 8.686        
cufflinks 6.652        
cufflinks 7.604        
cufflinks 7.244        
cufflinks 8.476        

0 Strain