Gene : Bradi1g22180 B. distachyon v3.1
Defline:  (1 of 3) PTHR31413:SF0 - NINJA-FAMILY PROTEIN AFP3 Genomic Order:  2782
Name:  ? Bradi1g22180 Secondary Identifier:  ? PAC:32792646
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g22180 0.5kb upstream 0.5kb upstream 3156 true Bd1: 17859789-17862944 Brachypodium distachyon
Bradi1g22180 0.5kb upstream 0.5kb upstream 500 false Bd1: 17859789-17860288 Brachypodium distachyon
Bradi1g22180 0.5kb downstream 0.5kb downstream 3156 true Bd1: 17860289-17863444 Brachypodium distachyon
Bradi1g22180 0.5kb downstream 0.5kb downstream 500 false Bd1: 17862945-17863444 Brachypodium distachyon
Bradi1g22180 1.0kb upstream 1.0kb upstream 3656 true Bd1: 17859289-17862944 Brachypodium distachyon
Bradi1g22180 1.0kb upstream 1.0kb upstream 1000 false Bd1: 17859289-17860288 Brachypodium distachyon
Bradi1g22180 1.0kb downstream 1.0kb downstream 3656 true Bd1: 17860289-17863944 Brachypodium distachyon
Bradi1g22180 1.0kb downstream 1.0kb downstream 1000 false Bd1: 17862945-17863944 Brachypodium distachyon
Bradi1g22180 2.0kb upstream 2.0kb upstream 4656 true Bd1: 17858289-17862944 Brachypodium distachyon
Bradi1g22180 2.0kb upstream 2.0kb upstream 2000 false Bd1: 17858289-17860288 Brachypodium distachyon
Bradi1g22180 2.0kb downstream 2.0kb downstream 4656 true Bd1: 17860289-17864944 Brachypodium distachyon
Bradi1g22180 2.0kb downstream 2.0kb downstream 2000 false Bd1: 17862945-17864944 Brachypodium distachyon
Bradi1g22180 5.0kb upstream 5.0kb upstream 7656 true Bd1: 17855289-17862944 Brachypodium distachyon
Bradi1g22180 5.0kb upstream 5.0kb upstream 5000 false Bd1: 17855289-17860288 Brachypodium distachyon
Bradi1g22180 5.0kb downstream 5.0kb downstream 7656 true Bd1: 17860289-17867944 Brachypodium distachyon
Bradi1g22180 5.0kb downstream 5.0kb downstream 5000 false Bd1: 17862945-17867944 Brachypodium distachyon
Bradi1g22180 10.0kb upstream 10.0kb upstream 12656 true Bd1: 17850289-17862944 Brachypodium distachyon
Bradi1g22180 10.0kb upstream 10.0kb upstream 10000 false Bd1: 17850289-17860288 Brachypodium distachyon
Bradi1g22180 10.0kb downstream 10.0kb downstream 12656 true Bd1: 17860289-17872944 Brachypodium distachyon
Bradi1g22180 10.0kb downstream 10.0kb downstream 10000 false Bd1: 17862945-17872944 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587117 5269 Grass View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.864        
cufflinks 4.46       Low
cufflinks 5.376       Low
cufflinks 8.662        
cufflinks 53.164     High High
cufflinks 4.964       Low
cufflinks 4.727       Low
cufflinks 11.774     High  
cufflinks 8.868        
cufflinks 26.057     High High
cufflinks 19.89     High  
cufflinks 9.618     High  
cufflinks 10.329     High  
cufflinks 15.778     High  
cufflinks 20.024     High  
cufflinks 5.569        
cufflinks 9.082        
cufflinks 5.563        
cufflinks 23.684     High High
cufflinks 70.98     High High
cufflinks 4.765       Low
cufflinks 18.822     High  
cufflinks 20.166     High  
cufflinks 8.865        
cufflinks 7.036        
cufflinks 9.121        
cufflinks 9.819     High  
cufflinks 11.413     High  
cufflinks 19.737     High  
cufflinks 7.534        

0 Strain