Gene : Bradi1g22572 B. distachyon v3.1
Defline:  (1 of 3) PTHR19305:SF7 - SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED Genomic Order:  2829
Name:  ? Bradi1g22572 Secondary Identifier:  ? PAC:32799156
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g22572 0.5kb upstream 0.5kb upstream 3963 true Bd1: 18114246-18118208 Brachypodium distachyon
Bradi1g22572 0.5kb upstream 0.5kb upstream 500 false Bd1: 18114246-18114745 Brachypodium distachyon
Bradi1g22572 0.5kb downstream 0.5kb downstream 3963 true Bd1: 18114746-18118708 Brachypodium distachyon
Bradi1g22572 0.5kb downstream 0.5kb downstream 500 false Bd1: 18118209-18118708 Brachypodium distachyon
Bradi1g22572 1.0kb upstream 1.0kb upstream 4463 true Bd1: 18113746-18118208 Brachypodium distachyon
Bradi1g22572 1.0kb upstream 1.0kb upstream 1000 false Bd1: 18113746-18114745 Brachypodium distachyon
Bradi1g22572 1.0kb downstream 1.0kb downstream 4463 true Bd1: 18114746-18119208 Brachypodium distachyon
Bradi1g22572 1.0kb downstream 1.0kb downstream 1000 false Bd1: 18118209-18119208 Brachypodium distachyon
Bradi1g22572 2.0kb upstream 2.0kb upstream 5463 true Bd1: 18112746-18118208 Brachypodium distachyon
Bradi1g22572 2.0kb upstream 2.0kb upstream 2000 false Bd1: 18112746-18114745 Brachypodium distachyon
Bradi1g22572 2.0kb downstream 2.0kb downstream 5463 true Bd1: 18114746-18120208 Brachypodium distachyon
Bradi1g22572 2.0kb downstream 2.0kb downstream 2000 false Bd1: 18118209-18120208 Brachypodium distachyon
Bradi1g22572 5.0kb upstream 5.0kb upstream 8463 true Bd1: 18109746-18118208 Brachypodium distachyon
Bradi1g22572 5.0kb upstream 5.0kb upstream 5000 false Bd1: 18109746-18114745 Brachypodium distachyon
Bradi1g22572 5.0kb downstream 5.0kb downstream 8463 true Bd1: 18114746-18123208 Brachypodium distachyon
Bradi1g22572 5.0kb downstream 5.0kb downstream 5000 false Bd1: 18118209-18123208 Brachypodium distachyon
Bradi1g22572 10.0kb upstream 10.0kb upstream 13463 true Bd1: 18104746-18118208 Brachypodium distachyon
Bradi1g22572 10.0kb upstream 10.0kb upstream 10000 false Bd1: 18104746-18114745 Brachypodium distachyon
Bradi1g22572 10.0kb downstream 10.0kb downstream 13463 true Bd1: 18114746-18128208 Brachypodium distachyon
Bradi1g22572 10.0kb downstream 10.0kb downstream 10000 false Bd1: 18118209-18128208 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124545704 5269 Grass View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.045     Low  
cufflinks 0.051     Low  
cufflinks 0.067     Low  
cufflinks 0.055     Low  
cufflinks 0.04     Low  
cufflinks 0.076     Low  
cufflinks 0.06     Low  
cufflinks 0.062     Low  
cufflinks 0.059     Low  
cufflinks 0.022     Low Low
cufflinks 0.095        
cufflinks 0.055     Low  
cufflinks 0.06        
cufflinks 0.09        
cufflinks 0.092        
cufflinks 0.057     Low  
cufflinks 0.055     Low  
cufflinks 0.504       High
cufflinks 0.079     Low  
cufflinks 0.062     Low  
cufflinks 0.057     Low  
cufflinks 0.047     Low  
cufflinks 0.056     Low  
cufflinks 0.053     Low  
cufflinks 0.06     Low  
cufflinks 0.069     Low  
cufflinks 0.093        
cufflinks 0.081     Low  
cufflinks 0.034     Low Low
cufflinks 0.067     Low  

0 Strain