Gene : Bradi1g22890 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2868
Name:  ? Bradi1g22890 Secondary Identifier:  ? PAC:32796183
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g22890 0.5kb upstream 0.5kb upstream 5648 true Bd1: 18396504-18402151 Brachypodium distachyon
Bradi1g22890 0.5kb upstream 0.5kb upstream 500 false Bd1: 18401652-18402151 Brachypodium distachyon
Bradi1g22890 0.5kb downstream 0.5kb downstream 5648 true Bd1: 18396004-18401651 Brachypodium distachyon
Bradi1g22890 0.5kb downstream 0.5kb downstream 500 false Bd1: 18396004-18396503 Brachypodium distachyon
Bradi1g22890 1.0kb upstream 1.0kb upstream 6148 true Bd1: 18396504-18402651 Brachypodium distachyon
Bradi1g22890 1.0kb upstream 1.0kb upstream 1000 false Bd1: 18401652-18402651 Brachypodium distachyon
Bradi1g22890 1.0kb downstream 1.0kb downstream 6148 true Bd1: 18395504-18401651 Brachypodium distachyon
Bradi1g22890 1.0kb downstream 1.0kb downstream 1000 false Bd1: 18395504-18396503 Brachypodium distachyon
Bradi1g22890 2.0kb upstream 2.0kb upstream 7148 true Bd1: 18396504-18403651 Brachypodium distachyon
Bradi1g22890 2.0kb upstream 2.0kb upstream 2000 false Bd1: 18401652-18403651 Brachypodium distachyon
Bradi1g22890 2.0kb downstream 2.0kb downstream 7148 true Bd1: 18394504-18401651 Brachypodium distachyon
Bradi1g22890 2.0kb downstream 2.0kb downstream 2000 false Bd1: 18394504-18396503 Brachypodium distachyon
Bradi1g22890 5.0kb upstream 5.0kb upstream 10148 true Bd1: 18396504-18406651 Brachypodium distachyon
Bradi1g22890 5.0kb upstream 5.0kb upstream 5000 false Bd1: 18401652-18406651 Brachypodium distachyon
Bradi1g22890 5.0kb downstream 5.0kb downstream 10148 true Bd1: 18391504-18401651 Brachypodium distachyon
Bradi1g22890 5.0kb downstream 5.0kb downstream 5000 false Bd1: 18391504-18396503 Brachypodium distachyon
Bradi1g22890 10.0kb upstream 10.0kb upstream 15148 true Bd1: 18396504-18411651 Brachypodium distachyon
Bradi1g22890 10.0kb upstream 10.0kb upstream 10000 false Bd1: 18401652-18411651 Brachypodium distachyon
Bradi1g22890 10.0kb downstream 10.0kb downstream 15148 true Bd1: 18386504-18401651 Brachypodium distachyon
Bradi1g22890 10.0kb downstream 10.0kb downstream 10000 false Bd1: 18386504-18396503 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587536 5269 Grass View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.324        
cufflinks 8.06       High
cufflinks 6.413        
cufflinks 6.882        
cufflinks 0.469       Low
cufflinks 4.66        
cufflinks 6.26        
cufflinks 3.176        
cufflinks 3.343        
cufflinks 1.634        
cufflinks 5.814        
cufflinks 3.832        
cufflinks 2.656        
cufflinks 3.293        
cufflinks 1.473        
cufflinks 5.535        
cufflinks 1.356        
cufflinks 0.789       Low
cufflinks 0.996        
cufflinks 0.128     Low Low
cufflinks 2.156        
cufflinks 3.005        
cufflinks 2.868        
cufflinks 3.85        
cufflinks 5.502        
cufflinks 5.058        
cufflinks 1.925        
cufflinks 3.851        
cufflinks 3.507        
cufflinks 5.396        

0 Strain