Gene : Bradi1g28627 B. distachyon v3.1
Defline:  (1 of 6) PF00331//PF02018 - Glycosyl hydrolase family 10 (Glyco_hydro_10) // Carbohydrate binding domain (CBM_4_9) Genomic Order:  3603
Name:  ? Bradi1g28627 Secondary Identifier:  ? PAC:32806003
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g28627 0.5kb upstream 0.5kb upstream 9323 true Bd1: 23952621-23961943 Brachypodium distachyon
Bradi1g28627 0.5kb upstream 0.5kb upstream 500 false Bd1: 23961444-23961943 Brachypodium distachyon
Bradi1g28627 0.5kb downstream 0.5kb downstream 9323 true Bd1: 23952121-23961443 Brachypodium distachyon
Bradi1g28627 0.5kb downstream 0.5kb downstream 500 false Bd1: 23952121-23952620 Brachypodium distachyon
Bradi1g28627 1.0kb upstream 1.0kb upstream 9823 true Bd1: 23952621-23962443 Brachypodium distachyon
Bradi1g28627 1.0kb upstream 1.0kb upstream 1000 false Bd1: 23961444-23962443 Brachypodium distachyon
Bradi1g28627 1.0kb downstream 1.0kb downstream 9823 true Bd1: 23951621-23961443 Brachypodium distachyon
Bradi1g28627 1.0kb downstream 1.0kb downstream 1000 false Bd1: 23951621-23952620 Brachypodium distachyon
Bradi1g28627 2.0kb upstream 2.0kb upstream 10823 true Bd1: 23952621-23963443 Brachypodium distachyon
Bradi1g28627 2.0kb upstream 2.0kb upstream 2000 false Bd1: 23961444-23963443 Brachypodium distachyon
Bradi1g28627 2.0kb downstream 2.0kb downstream 10823 true Bd1: 23950621-23961443 Brachypodium distachyon
Bradi1g28627 2.0kb downstream 2.0kb downstream 2000 false Bd1: 23950621-23952620 Brachypodium distachyon
Bradi1g28627 5.0kb upstream 5.0kb upstream 13823 true Bd1: 23952621-23966443 Brachypodium distachyon
Bradi1g28627 5.0kb upstream 5.0kb upstream 5000 false Bd1: 23961444-23966443 Brachypodium distachyon
Bradi1g28627 5.0kb downstream 5.0kb downstream 13823 true Bd1: 23947621-23961443 Brachypodium distachyon
Bradi1g28627 5.0kb downstream 5.0kb downstream 5000 false Bd1: 23947621-23952620 Brachypodium distachyon
Bradi1g28627 10.0kb upstream 10.0kb upstream 18823 true Bd1: 23952621-23971443 Brachypodium distachyon
Bradi1g28627 10.0kb upstream 10.0kb upstream 10000 false Bd1: 23961444-23971443 Brachypodium distachyon
Bradi1g28627 10.0kb downstream 10.0kb downstream 18823 true Bd1: 23942621-23961443 Brachypodium distachyon
Bradi1g28627 10.0kb downstream 10.0kb downstream 10000 false Bd1: 23942621-23952620 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568391 5269 Grass View MSA
122047511 5273 Angiosperm View MSA
121347321 5274 Embryophyte View MSA
123426707 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.341        
cufflinks 0.546        
cufflinks 0.537        
cufflinks 0.472        
cufflinks 0.39        
cufflinks 0.482        
cufflinks 0.432        
cufflinks 0.374        
cufflinks 0.461        
cufflinks 0.262        
cufflinks 0.241       Low
cufflinks 0.564        
cufflinks 0.208       Low
cufflinks 0.143       Low
cufflinks 0.391        
cufflinks 0.473        
cufflinks 0.333        
cufflinks 1.019       High
cufflinks 0.813       High
cufflinks 1.367       High
cufflinks 0.784       High
cufflinks 0.451        
cufflinks 0.418        
cufflinks 0.424        
cufflinks 0.392        
cufflinks 0.408        
cufflinks 0.188       Low
cufflinks 0.429        
cufflinks 0.405        
cufflinks 0.919       High

0 Strain