Gene : Bradi1g29000 B. distachyon v3.1
Defline:  (1 of 1) PTHR34549:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED Genomic Order:  3659
Name:  ? Bradi1g29000 Secondary Identifier:  ? PAC:32800232
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g29000 0.5kb upstream 0.5kb upstream 1608 true Bd1: 24451955-24453562 Brachypodium distachyon
Bradi1g29000 0.5kb upstream 0.5kb upstream 500 false Bd1: 24451955-24452454 Brachypodium distachyon
Bradi1g29000 0.5kb downstream 0.5kb downstream 1608 true Bd1: 24452455-24454062 Brachypodium distachyon
Bradi1g29000 0.5kb downstream 0.5kb downstream 500 false Bd1: 24453563-24454062 Brachypodium distachyon
Bradi1g29000 1.0kb upstream 1.0kb upstream 2108 true Bd1: 24451455-24453562 Brachypodium distachyon
Bradi1g29000 1.0kb upstream 1.0kb upstream 1000 false Bd1: 24451455-24452454 Brachypodium distachyon
Bradi1g29000 1.0kb downstream 1.0kb downstream 2108 true Bd1: 24452455-24454562 Brachypodium distachyon
Bradi1g29000 1.0kb downstream 1.0kb downstream 1000 false Bd1: 24453563-24454562 Brachypodium distachyon
Bradi1g29000 2.0kb upstream 2.0kb upstream 3108 true Bd1: 24450455-24453562 Brachypodium distachyon
Bradi1g29000 2.0kb upstream 2.0kb upstream 2000 false Bd1: 24450455-24452454 Brachypodium distachyon
Bradi1g29000 2.0kb downstream 2.0kb downstream 3108 true Bd1: 24452455-24455562 Brachypodium distachyon
Bradi1g29000 2.0kb downstream 2.0kb downstream 2000 false Bd1: 24453563-24455562 Brachypodium distachyon
Bradi1g29000 5.0kb upstream 5.0kb upstream 6108 true Bd1: 24447455-24453562 Brachypodium distachyon
Bradi1g29000 5.0kb upstream 5.0kb upstream 5000 false Bd1: 24447455-24452454 Brachypodium distachyon
Bradi1g29000 5.0kb downstream 5.0kb downstream 6108 true Bd1: 24452455-24458562 Brachypodium distachyon
Bradi1g29000 5.0kb downstream 5.0kb downstream 5000 false Bd1: 24453563-24458562 Brachypodium distachyon
Bradi1g29000 10.0kb upstream 10.0kb upstream 11108 true Bd1: 24442455-24453562 Brachypodium distachyon
Bradi1g29000 10.0kb upstream 10.0kb upstream 10000 false Bd1: 24442455-24452454 Brachypodium distachyon
Bradi1g29000 10.0kb downstream 10.0kb downstream 11108 true Bd1: 24452455-24463562 Brachypodium distachyon
Bradi1g29000 10.0kb downstream 10.0kb downstream 10000 false Bd1: 24453563-24463562 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588959 5269 Grass View MSA
122047877 5273 Angiosperm View MSA
121348572 5274 Embryophyte View MSA
123426677 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1081.312     High  
cufflinks 759.708     High  
cufflinks 520.726     High  
cufflinks 895.793     High  
cufflinks 1172.384     High  
cufflinks 1120.436     High  
cufflinks 1113.78     High  
cufflinks 1123.506     High  
cufflinks 1193.893     High  
cufflinks 2209.809     High  
cufflinks 1033.794     High  
cufflinks 892.648     High  
cufflinks 1792.825     High  
cufflinks 1853.694     High  
cufflinks 923.97     High  
cufflinks 988.955     High  
cufflinks 1799.066     High  
cufflinks 13.481     High Low
cufflinks 1184.382     High  
cufflinks 993.788     High  
cufflinks 1123.827     High  
cufflinks 861.148     High  
cufflinks 1249.743     High  
cufflinks 1549.988     High  
cufflinks 1729.829     High  
cufflinks 887.786     High  
cufflinks 1408.625     High  
cufflinks 1037.323     High  
cufflinks 1084.975     High  
cufflinks 540.886     High  

0 Strain