Gene : Bradi1g29147 B. distachyon v3.1
Defline:  (1 of 34) PF03101//PF04434//PF10551 - FAR1 DNA-binding domain (FAR1) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  3684
Name:  ? Bradi1g29147 Secondary Identifier:  ? PAC:32804345
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g29147 0.5kb upstream 0.5kb upstream 5241 true Bd1: 24756369-24761609 Brachypodium distachyon
Bradi1g29147 0.5kb upstream 0.5kb upstream 500 false Bd1: 24761110-24761609 Brachypodium distachyon
Bradi1g29147 0.5kb downstream 0.5kb downstream 5241 true Bd1: 24755869-24761109 Brachypodium distachyon
Bradi1g29147 0.5kb downstream 0.5kb downstream 500 false Bd1: 24755869-24756368 Brachypodium distachyon
Bradi1g29147 1.0kb upstream 1.0kb upstream 5741 true Bd1: 24756369-24762109 Brachypodium distachyon
Bradi1g29147 1.0kb upstream 1.0kb upstream 1000 false Bd1: 24761110-24762109 Brachypodium distachyon
Bradi1g29147 1.0kb downstream 1.0kb downstream 5741 true Bd1: 24755369-24761109 Brachypodium distachyon
Bradi1g29147 1.0kb downstream 1.0kb downstream 1000 false Bd1: 24755369-24756368 Brachypodium distachyon
Bradi1g29147 2.0kb upstream 2.0kb upstream 6741 true Bd1: 24756369-24763109 Brachypodium distachyon
Bradi1g29147 2.0kb upstream 2.0kb upstream 2000 false Bd1: 24761110-24763109 Brachypodium distachyon
Bradi1g29147 2.0kb downstream 2.0kb downstream 6741 true Bd1: 24754369-24761109 Brachypodium distachyon
Bradi1g29147 2.0kb downstream 2.0kb downstream 2000 false Bd1: 24754369-24756368 Brachypodium distachyon
Bradi1g29147 5.0kb upstream 5.0kb upstream 9741 true Bd1: 24756369-24766109 Brachypodium distachyon
Bradi1g29147 5.0kb upstream 5.0kb upstream 5000 false Bd1: 24761110-24766109 Brachypodium distachyon
Bradi1g29147 5.0kb downstream 5.0kb downstream 9741 true Bd1: 24751369-24761109 Brachypodium distachyon
Bradi1g29147 5.0kb downstream 5.0kb downstream 5000 false Bd1: 24751369-24756368 Brachypodium distachyon
Bradi1g29147 10.0kb upstream 10.0kb upstream 14741 true Bd1: 24756369-24771109 Brachypodium distachyon
Bradi1g29147 10.0kb upstream 10.0kb upstream 10000 false Bd1: 24761110-24771109 Brachypodium distachyon
Bradi1g29147 10.0kb downstream 10.0kb downstream 14741 true Bd1: 24746369-24761109 Brachypodium distachyon
Bradi1g29147 10.0kb downstream 10.0kb downstream 10000 false Bd1: 24746369-24756368 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590534 5269 Grass View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.402        
cufflinks 0.887       High
cufflinks 0.885       High
cufflinks 0.672        
cufflinks 0.17       Low
cufflinks 0.725        
cufflinks 0.703        
cufflinks 0.628        
cufflinks 0.784        
cufflinks 0.563        
cufflinks 0.51        
cufflinks 0.626        
cufflinks 0.578        
cufflinks 0.486        
cufflinks 0.395        
cufflinks 0.715        
cufflinks 0.358        
cufflinks 0.81        
cufflinks 0.341       Low
cufflinks 0.228       Low
cufflinks 0.531        
cufflinks 0.854        
cufflinks 0.638        
cufflinks 0.66        
cufflinks 0.67        
cufflinks 0.75        
cufflinks 0.775        
cufflinks 0.789        
cufflinks 0.778        
cufflinks 0.585        

0 Strain