Gene : Bradi1g29740 B. distachyon v3.1
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  3769
Name:  ? Bradi1g29740 Secondary Identifier:  ? PAC:32796524
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6689 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g29740 0.5kb upstream 0.5kb upstream 3747 true Bd1: 25304705-25308451 Brachypodium distachyon
Bradi1g29740 0.5kb upstream 0.5kb upstream 500 false Bd1: 25304705-25305204 Brachypodium distachyon
Bradi1g29740 0.5kb downstream 0.5kb downstream 3747 true Bd1: 25305205-25308951 Brachypodium distachyon
Bradi1g29740 0.5kb downstream 0.5kb downstream 500 false Bd1: 25308452-25308951 Brachypodium distachyon
Bradi1g29740 1.0kb upstream 1.0kb upstream 4247 true Bd1: 25304205-25308451 Brachypodium distachyon
Bradi1g29740 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25304205-25305204 Brachypodium distachyon
Bradi1g29740 1.0kb downstream 1.0kb downstream 4247 true Bd1: 25305205-25309451 Brachypodium distachyon
Bradi1g29740 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25308452-25309451 Brachypodium distachyon
Bradi1g29740 2.0kb upstream 2.0kb upstream 5247 true Bd1: 25303205-25308451 Brachypodium distachyon
Bradi1g29740 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25303205-25305204 Brachypodium distachyon
Bradi1g29740 2.0kb downstream 2.0kb downstream 5247 true Bd1: 25305205-25310451 Brachypodium distachyon
Bradi1g29740 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25308452-25310451 Brachypodium distachyon
Bradi1g29740 5.0kb upstream 5.0kb upstream 8247 true Bd1: 25300205-25308451 Brachypodium distachyon
Bradi1g29740 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25300205-25305204 Brachypodium distachyon
Bradi1g29740 5.0kb downstream 5.0kb downstream 8247 true Bd1: 25305205-25313451 Brachypodium distachyon
Bradi1g29740 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25308452-25313451 Brachypodium distachyon
Bradi1g29740 10.0kb upstream 10.0kb upstream 13247 true Bd1: 25295205-25308451 Brachypodium distachyon
Bradi1g29740 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25295205-25305204 Brachypodium distachyon
Bradi1g29740 10.0kb downstream 10.0kb downstream 13247 true Bd1: 25305205-25318451 Brachypodium distachyon
Bradi1g29740 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25308452-25318451 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
124584479 5269 Grass View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.405        
cufflinks 0.555        
cufflinks 0.68        
cufflinks 0.536        
cufflinks 0.26        
cufflinks 0.414        
cufflinks 0.464        
cufflinks 0.383        
cufflinks 0.42        
cufflinks 0.527        
cufflinks 0.164       Low
cufflinks 0.221        
cufflinks 0.111       Low
cufflinks 0.188       Low
cufflinks 0.226        
cufflinks 0.398        
cufflinks 0.76       High
cufflinks 0.639        
cufflinks 0.769       High
cufflinks 0.044     Low Low
cufflinks 0.656        
cufflinks 0.364        
cufflinks 0.335        
cufflinks 0.362        
cufflinks 0.503        
cufflinks 0.447        
cufflinks 0.206        
cufflinks 0.566        
cufflinks 0.487        
cufflinks 0.499        

0 Strain