Gene : Bradi5g00430 B. distachyon v3.1
Defline:  (1 of 1) PTHR22715 - TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 Genomic Order:  11
Name:  ? Bradi5g00430 Secondary Identifier:  ? PAC:32810345
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g00430 0.5kb upstream 0.5kb upstream 15065 true Bd5: 376358-391422 Brachypodium distachyon
Bradi5g00430 0.5kb upstream 0.5kb upstream 500 false Bd5: 376358-376857 Brachypodium distachyon
Bradi5g00430 0.5kb downstream 0.5kb downstream 15065 true Bd5: 376858-391922 Brachypodium distachyon
Bradi5g00430 0.5kb downstream 0.5kb downstream 500 false Bd5: 391423-391922 Brachypodium distachyon
Bradi5g00430 1.0kb upstream 1.0kb upstream 15565 true Bd5: 375858-391422 Brachypodium distachyon
Bradi5g00430 1.0kb upstream 1.0kb upstream 1000 false Bd5: 375858-376857 Brachypodium distachyon
Bradi5g00430 1.0kb downstream 1.0kb downstream 15565 true Bd5: 376858-392422 Brachypodium distachyon
Bradi5g00430 1.0kb downstream 1.0kb downstream 1000 false Bd5: 391423-392422 Brachypodium distachyon
Bradi5g00430 2.0kb upstream 2.0kb upstream 16565 true Bd5: 374858-391422 Brachypodium distachyon
Bradi5g00430 2.0kb upstream 2.0kb upstream 2000 false Bd5: 374858-376857 Brachypodium distachyon
Bradi5g00430 2.0kb downstream 2.0kb downstream 16565 true Bd5: 376858-393422 Brachypodium distachyon
Bradi5g00430 2.0kb downstream 2.0kb downstream 2000 false Bd5: 391423-393422 Brachypodium distachyon
Bradi5g00430 5.0kb upstream 5.0kb upstream 19565 true Bd5: 371858-391422 Brachypodium distachyon
Bradi5g00430 5.0kb upstream 5.0kb upstream 5000 false Bd5: 371858-376857 Brachypodium distachyon
Bradi5g00430 5.0kb downstream 5.0kb downstream 19565 true Bd5: 376858-396422 Brachypodium distachyon
Bradi5g00430 5.0kb downstream 5.0kb downstream 5000 false Bd5: 391423-396422 Brachypodium distachyon
Bradi5g00430 10.0kb upstream 10.0kb upstream 24565 true Bd5: 366858-391422 Brachypodium distachyon
Bradi5g00430 10.0kb upstream 10.0kb upstream 10000 false Bd5: 366858-376857 Brachypodium distachyon
Bradi5g00430 10.0kb downstream 10.0kb downstream 24565 true Bd5: 376858-401422 Brachypodium distachyon
Bradi5g00430 10.0kb downstream 10.0kb downstream 10000 false Bd5: 391423-401422 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579727 5269 Grass View MSA
122043889 5273 Angiosperm View MSA
121348406 5274 Embryophyte View MSA
123380850 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.151        
cufflinks 0.34        
cufflinks 0.328        
cufflinks 0.268        
cufflinks 0.077     Low Low
cufflinks 0.307        
cufflinks 0.264        
cufflinks 0.221        
cufflinks 0.304        
cufflinks 0.204        
cufflinks 0.301        
cufflinks 0.297        
cufflinks 0.277        
cufflinks 0.202        
cufflinks 0.139        
cufflinks 0.276        
cufflinks 0.121     Low  
cufflinks 0.415       High
cufflinks 0.069     Low Low
cufflinks 0.1     Low Low
cufflinks 0.147        
cufflinks 0.306        
cufflinks 0.217        
cufflinks 0.243        
cufflinks 0.241        
cufflinks 0.295        
cufflinks 0.265        
cufflinks 0.265        
cufflinks 0.276        
cufflinks 0.331        

0 Strain