Gene : Bradi1g32560 B. distachyon v3.1
Defline:  (1 of 1) K14404 - cleavage and polyadenylation specificity factor subunit 4 (CPSF4, YTH1) Genomic Order:  4134
Name:  ? Bradi1g32560 Secondary Identifier:  ? PAC:32797459
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g32560 0.5kb upstream 0.5kb upstream 5435 true Bd1: 28032744-28038178 Brachypodium distachyon
Bradi1g32560 0.5kb upstream 0.5kb upstream 500 false Bd1: 28037679-28038178 Brachypodium distachyon
Bradi1g32560 0.5kb downstream 0.5kb downstream 5435 true Bd1: 28032244-28037678 Brachypodium distachyon
Bradi1g32560 0.5kb downstream 0.5kb downstream 500 false Bd1: 28032244-28032743 Brachypodium distachyon
Bradi1g32560 1.0kb upstream 1.0kb upstream 5935 true Bd1: 28032744-28038678 Brachypodium distachyon
Bradi1g32560 1.0kb upstream 1.0kb upstream 1000 false Bd1: 28037679-28038678 Brachypodium distachyon
Bradi1g32560 1.0kb downstream 1.0kb downstream 5935 true Bd1: 28031744-28037678 Brachypodium distachyon
Bradi1g32560 1.0kb downstream 1.0kb downstream 1000 false Bd1: 28031744-28032743 Brachypodium distachyon
Bradi1g32560 2.0kb upstream 2.0kb upstream 6935 true Bd1: 28032744-28039678 Brachypodium distachyon
Bradi1g32560 2.0kb upstream 2.0kb upstream 2000 false Bd1: 28037679-28039678 Brachypodium distachyon
Bradi1g32560 2.0kb downstream 2.0kb downstream 6935 true Bd1: 28030744-28037678 Brachypodium distachyon
Bradi1g32560 2.0kb downstream 2.0kb downstream 2000 false Bd1: 28030744-28032743 Brachypodium distachyon
Bradi1g32560 5.0kb upstream 5.0kb upstream 9935 true Bd1: 28032744-28042678 Brachypodium distachyon
Bradi1g32560 5.0kb upstream 5.0kb upstream 5000 false Bd1: 28037679-28042678 Brachypodium distachyon
Bradi1g32560 5.0kb downstream 5.0kb downstream 9935 true Bd1: 28027744-28037678 Brachypodium distachyon
Bradi1g32560 5.0kb downstream 5.0kb downstream 5000 false Bd1: 28027744-28032743 Brachypodium distachyon
Bradi1g32560 10.0kb upstream 10.0kb upstream 14935 true Bd1: 28032744-28047678 Brachypodium distachyon
Bradi1g32560 10.0kb upstream 10.0kb upstream 10000 false Bd1: 28037679-28047678 Brachypodium distachyon
Bradi1g32560 10.0kb downstream 10.0kb downstream 14935 true Bd1: 28022744-28037678 Brachypodium distachyon
Bradi1g32560 10.0kb downstream 10.0kb downstream 10000 false Bd1: 28022744-28032743 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580661 5269 Grass View MSA
122044898 5273 Angiosperm View MSA
121345406 5274 Embryophyte View MSA
123426118 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.157        
cufflinks 6.158        
cufflinks 6.058        
cufflinks 5.445        
cufflinks 3.167       Low
cufflinks 5.474        
cufflinks 5.283        
cufflinks 5.011        
cufflinks 5.853        
cufflinks 5.201        
cufflinks 2.927       Low
cufflinks 5.859        
cufflinks 3.243       Low
cufflinks 3.036       Low
cufflinks 5.682        
cufflinks 4.897        
cufflinks 4.135        
cufflinks 7.457       High
cufflinks 4.879        
cufflinks 4.052        
cufflinks 4.718        
cufflinks 6.467        
cufflinks 5.573        
cufflinks 5.396        
cufflinks 5.255        
cufflinks 5.644        
cufflinks 4.704        
cufflinks 5.802        
cufflinks 5.716        
cufflinks 6.102        

0 Strain